View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_high_24 (Length: 357)
Name: NF11201_high_24
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 10103410 - 10103746
Alignment:
| Q |
15 |
acaagcttcagagacacaggatgtgaagatagtcttaaactaagaattaacttaatatatgtttatctgatgtgtgtcagcttacaatatgctagttttg |
114 |
Q |
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| T |
10103410 |
acaagcttcagagacacaggatgtgaagatagtcttaaactaagaattaacttaatatatgtttatctgatgtgtgtcagcttacaatatgctagttttg |
10103509 |
T |
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| Q |
115 |
tctagttgcgggagattttttgttggacactcttccaaagtggcatgtaaggatagtttaaataatgtaatttatccgaccaatttcactgaaataatct |
214 |
Q |
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| T |
10103510 |
tctagttgcgggaggttttttgttggacactcttccaaagtggcatgtaaggatagttcaaataatgtaatttatccgaccaatttcactgaaataatct |
10103609 |
T |
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| Q |
215 |
acatttaaagatg-nnnnnnntgttatcaatgcatttttatatctccaagatgtagactttattttccagggagaaaaggtctgacaaatttcatcgctt |
313 |
Q |
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| T |
10103610 |
acatttaaagatgaaaaaaaatgctatgaatgcatttttatatctccaagatgtagactctattttctagtgagaaaaggtctgacaaatttcatcgctt |
10103709 |
T |
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| Q |
314 |
tgaactattataatctatacaatattaattcatctct |
350 |
Q |
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| T |
10103710 |
tgaactaatataatctatacaatattaattcatctct |
10103746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 10079584 - 10079634
Alignment:
| Q |
301 |
aatttcatcgctttgaactattataatcta-tacaatattaattcatctct |
350 |
Q |
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| T |
10079584 |
aatttcatcgcattgaactaatataatctattacaatataaattcatctct |
10079634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 10096005 - 10096047
Alignment:
| Q |
69 |
atatatgtttatctgatgtgtgtcagcttacaatatgctagtt |
111 |
Q |
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| T |
10096005 |
atatatgtttgtctgatgtgtgtcggcttacaatgtgctagtt |
10096047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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