View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11201_high_3 (Length: 649)
Name: NF11201_high_3
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_high_3 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 631
Target Start/End: Complemental strand, 679608 - 678977
Alignment:
| Q |
1 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679608 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca |
679509 |
T |
|
| Q |
101 |
agaatagagggcatcccacattatttcaattctccaaacccagcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679508 |
agaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttg |
679409 |
T |
|
| Q |
201 |
ctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
679408 |
ctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatgtagttatat |
679309 |
T |
|
| Q |
301 |
gcctcattttcannnnnnnnnn-ctttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgtta |
399 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679308 |
gcctcattttcatttttttttttctttctagttctgagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgtta |
679209 |
T |
|
| Q |
400 |
acagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679208 |
acagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgt |
679109 |
T |
|
| Q |
500 |
tagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttata |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679108 |
tagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttata |
679009 |
T |
|
| Q |
600 |
ttttgtacaggatttctcagcaagtgatcttg |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
679008 |
ttttgtacaggatttctcagcaagtgatcttg |
678977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 123 - 604
Target Start/End: Complemental strand, 751290 - 750811
Alignment:
| Q |
123 |
atttcaattctccaaacccagcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc |
222 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751290 |
atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc |
751191 |
T |
|
| Q |
223 |
atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnn |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
751190 |
atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- |
751092 |
T |
|
| Q |
323 |
ctttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgtttatcc |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751091 |
-tttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgtttatcc |
750993 |
T |
|
| Q |
423 |
ttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaa |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
750992 |
ttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaa |
750893 |
T |
|
| Q |
523 |
ttaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttg |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
750892 |
ttaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttg |
750811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 125 - 597
Target Start/End: Original strand, 2632504 - 2632953
Alignment:
| Q |
125 |
ttcaattctccaaacccagcagttctaaaatcagcgcactatatgttttgtgaagatcagat----tctttcaacacttgctcttttgattatcatagta |
220 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| || | |||||||||||||||| | ||||||| |||| | ||||| ||||||||||| |
|
|
| T |
2632504 |
ttcaattctccaaaccctgcagttttaaaatcagcacatt----gttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatagt- |
2632598 |
T |
|
| Q |
221 |
tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnn |
320 |
Q |
| |
|
|||| ||||||||||||| | || |||||| | ||||||||| | ||||||||||||||||| || | | || |||||||| |||||| |
|
|
| T |
2632599 |
-catacacttcacatgtgtgtgaataattcata---tttagctttttgaaacttatagtgagttttaa-tgcaattctatgcctcgttttcatt------ |
2632687 |
T |
|
| Q |
321 |
nnctttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgtttat |
420 |
Q |
| |
|
||||| ||| | ||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2632688 |
---tttcttgttttgagaattagaagaatgctgc--atatttgagtattttccaagataatgaaaaggtgaggttgttaacagaatggaaacatgtttat |
2632782 |
T |
|
| Q |
421 |
ccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaaga |
520 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||| |||||||||||||||||||||||| |||| | |
|
|
| T |
2632783 |
ccttgc----gagtgcttgggtatgtggcttagtgctcattctagttgactgctctgtagagcttccc-ccatacatgttagtcatcaattttttaaaca |
2632877 |
T |
|
| Q |
521 |
aattaacatg-ttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagtttta |
597 |
Q |
| |
|
|||||||||| |||||| | || ||||||||| ||||||| ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
2632878 |
aattaacatgtttattaatttcttggtaactt--tgtgttgctagtgctgaattaatcatattgtacattcagtttta |
2632953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 442 - 604
Target Start/End: Complemental strand, 9564816 - 9564654
Alignment:
| Q |
442 |
tatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctc |
541 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| | || |
|
|
| T |
9564816 |
tatgtggcttagtgttcatcctagttgactgctctatagagcttccctccatacatgttagtcataaattttctaaagaaattaacattttattaatttc |
9564717 |
T |
|
| Q |
542 |
gtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttg |
604 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
9564716 |
ttgggaactttatgtgttgttaatgctaaattaatcatatagtacaataagttttttattttg |
9564654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 747526 - 747402
Alignment:
| Q |
1 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| | |
|
|
| T |
747526 |
aagctttggatatgatcatttcattgataattataaggtcgttgttgtttcttcagaaaaagaggttttttttaatactttgggggctgattattggaaa |
747427 |
T |
|
| Q |
101 |
agaatagagggcatcccacattatt |
125 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
747426 |
agaatagagggcatcccacattatt |
747402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 386 - 596
Target Start/End: Complemental strand, 7317545 - 7317339
Alignment:
| Q |
386 |
aggtgaggttgttaacagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggctt |
485 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||| ||||||||| || ||| |||||| ||||||||||| | | ||||| || ||| |
|
|
| T |
7317545 |
aggtgaggttgttaacagaatatcaacatgtttatcattatc----agtgcttggataggtgacttagtactcatcctagttgcccgctctgtacaactt |
7317450 |
T |
|
| Q |
486 |
cccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgta |
585 |
Q |
| |
|
||| | || |||||||||||||||| |||||||||| |||||||||||||| | || ||| ||||||||||||| ||||||| || ||||||||| ||| |
|
|
| T |
7317449 |
ccctctattcatgttagtcatcaatcttctaaagaatttaacatgttattaatttcttggcaactttatgtgtttctagtgctgaaataatcatatagta |
7317350 |
T |
|
| Q |
586 |
cattaagtttt |
596 |
Q |
| |
|
||| |||||| |
|
|
| T |
7317349 |
tattcagtttt |
7317339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 457 - 581
Target Start/End: Complemental strand, 668075 - 667951
Alignment:
| Q |
457 |
tcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgt |
556 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||||||| || ||||||| |||||| | || ||| || ||||||| |
|
|
| T |
668075 |
tcatcctagtttcctgctctgtagagcttccctccatacatgttagtcatcaattttctaaacaatttaacattttattaatttcttggcaattttatgt |
667976 |
T |
|
| Q |
557 |
gttgttagtgctaaattaatcatat |
581 |
Q |
| |
|
|||||||||||| || ||||||||| |
|
|
| T |
667975 |
gttgttagtgctgaaataatcatat |
667951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 325 - 415
Target Start/End: Complemental strand, 9564909 - 9564819
Alignment:
| Q |
325 |
ttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatg |
415 |
Q |
| |
|
|||| ||||| |||||||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9564909 |
ttctggttctgagaattagaagaatgctgtatgtatttgagtattttccaagacagtgaaaaggtgaggttgttaacagaatgtcaacatg |
9564819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 7324803 - 7324687
Alignment:
| Q |
2 |
agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa |
101 |
Q |
| |
|
|||||||| || |||||||| |||||||| ||||||| ||||||||||||| |||| | ||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
7324803 |
agctttgggtacgatcatttaattgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactttggggactgattattggacaa |
7324704 |
T |
|
| Q |
102 |
gaatagagggcatccca |
118 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
7324703 |
gaatagaggacatccca |
7324687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 2491754 - 2491871
Alignment:
| Q |
1 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca |
100 |
Q |
| |
|
||||||||| |||||||||||||||||| | ||||||| ||| ||||||||| ||||| || ||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
2491754 |
aagctttgggtatgatcatttcattgatgattataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggaca |
2491853 |
T |
|
| Q |
101 |
agaatagagggcatccca |
118 |
Q |
| |
|
||||| ||| ||||||| |
|
|
| T |
2491854 |
agaatcaaggacatccca |
2491871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 500 - 596
Target Start/End: Complemental strand, 2642618 - 2642522
Alignment:
| Q |
500 |
tagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagtttt |
596 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| | || |||||||||||| ||| ||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
2642618 |
tagtcattagttttctaaagaaattaacatgttattaatttcttggtaactttattccttgctagtgctgaattaatcatatagtacattcagtttt |
2642522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 9595018 - 9594898
Alignment:
| Q |
1 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca |
100 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||||||| ||| | || |||| |||| || |||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
9595018 |
aagcttcgggtatgatcatttcattgataagtataaggtcattgattttgcttccaaaaatgatgtttttgtttatactttggggactgattattggaca |
9594919 |
T |
|
| Q |
101 |
agaatagagggcatcccacat |
121 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
9594918 |
agaatagaggacatcccacat |
9594898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 2501829 - 2501944
Alignment:
| Q |
1 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| || ||| | ||||||||||||||| ||||||||||| | |
|
|
| T |
2501829 |
aagctttggatatgatcatttcattgataattataaggtcattgttgtttctgacgaaaatgaagttagggttaatactttggggactgattattggaga |
2501928 |
T |
|
| Q |
101 |
agaatagagggcatcc |
116 |
Q |
| |
|
| ||||||| ||||| |
|
|
| T |
2501929 |
aagatagaggacatcc |
2501944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 482 - 563
Target Start/End: Complemental strand, 7339829 - 7339748
Alignment:
| Q |
482 |
gcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgtta |
563 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||| |||||| |||||| | || | |||||||||||||||||| |
|
|
| T |
7339829 |
gcttccctccatacatattagtcatcaattttctaaagaaagtaacattttattaatttcttattaactttatgtgttgtta |
7339748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 9566207 - 9566094
Alignment:
| Q |
5 |
tttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaa |
104 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| | || ||||||| || |||| || ||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
9566207 |
tttgggtatgatcatttcattgataattataagctcatttctgtttctacaaaaaatgaagttagtgtttatactttggggactgattattggacaagaa |
9566108 |
T |
|
| Q |
105 |
tagagggcatccca |
118 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
9566107 |
tagaggacatccca |
9566094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 7443373 - 7443269
Alignment:
| Q |
5 |
tttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaa |
104 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||||||| | ||||||| || | ||||||| ||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
7443373 |
tttgggtatgatcatttcattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggagaagaa |
7443274 |
T |
|
| Q |
105 |
tagag |
109 |
Q |
| |
|
||||| |
|
|
| T |
7443273 |
tagag |
7443269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 9562342 - 9562235
Alignment:
| Q |
11 |
tatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| | |||| || ||| ||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
9562342 |
tatgatcatttcattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagagg |
9562243 |
T |
|
| Q |
111 |
gcatccca |
118 |
Q |
| |
|
||||||| |
|
|
| T |
9562242 |
acatccca |
9562235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 2474777 - 2474895
Alignment:
| Q |
1 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttggggga-tgattattggac |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||| |||| ||||||| |||| || ||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
2474777 |
aagctttggatatgatcatttcattgataattacaaggccattgtattttcttccaaaaatgaagttagtgttaatacttttaaggactgattattggac |
2474876 |
T |
|
| Q |
100 |
aagaatagagggcatccca |
118 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
2474877 |
aagaatagaggacatccca |
2474895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 754997 - 754888
Alignment:
| Q |
1 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||| | ||||| || ||||||| || |||| || ||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
754997 |
aagctttgggtatgatcatttcattcataattacaaggtcatttctgtttctacaaaaaatgaagtttgtgtttatacattggggactgattattggaca |
754898 |
T |
|
| Q |
101 |
agaatagagg |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
754897 |
agaatagagg |
754888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 2644738 - 2644633
Alignment:
| Q |
1 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca |
100 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||| || |||||||| ||||| || ||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
2644738 |
aagctttggatatgatcacttcgttgataattataaggtcattattgtttctgacgaaaatgaagttagggttaatactttggggactgattattggaca |
2644639 |
T |
|
| Q |
101 |
agaata |
106 |
Q |
| |
|
|||||| |
|
|
| T |
2644638 |
agaata |
2644633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 2659525 - 2659420
Alignment:
| Q |
1 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||| ||||| |||||| | || ||||||||||||||||| ||||||||||| | |
|
|
| T |
2659525 |
aagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgttaatactttggggactgattattggaga |
2659426 |
T |
|
| Q |
101 |
agaata |
106 |
Q |
| |
|
|||||| |
|
|
| T |
2659425 |
agaata |
2659420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 7334657 - 7334560
Alignment:
| Q |
1 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattgga |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| |||| ||||||| | ||||| | ||| ||||| |||||||||| ||||||||||| |
|
|
| T |
7334657 |
aagcttcggatatgatcatttcattgataattataaggtcgttgctgtttctgtaaaaaaaaaagttagtgtttatactttgggaactgattattgga |
7334560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 2631014 - 2631138
Alignment:
| Q |
1 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca |
100 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||| ||| ||||||||| |||| || |||| | || ||||||| ||| ||||||||||| | |
|
|
| T |
2631014 |
aagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttctttatactttagggactgattattggaaa |
2631113 |
T |
|
| Q |
101 |
agaatagagggcatcccacattatt |
125 |
Q |
| |
|
|||||||| | ||||||| |||||| |
|
|
| T |
2631114 |
agaatagacgacatcccatattatt |
2631138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 581
Target Start/End: Complemental strand, 2650136 - 2650058
Alignment:
| Q |
503 |
tcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatat |
581 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| | || ||||||||||||| ||| | ||||| |||| ||||||| |
|
|
| T |
2650136 |
tcatcaattttctaaagaagtttacatgttattaatttcttggtaactttatgccttgctggtgcttaatttatcatat |
2650058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 2476309 - 2476426
Alignment:
| Q |
1 |
aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca |
100 |
Q |
| |
|
||||||||| |||||||||| |||||||| | ||||| || |||||||| |||| || ||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
2476309 |
aagctttgggtatgatcattctattgataactacaaggtcattcttgtttctgacaaaaacgaagttagtgttaatactttggggactgattattggaca |
2476408 |
T |
|
| Q |
101 |
agaatagagggcatccca |
118 |
Q |
| |
|
||||| ||| ||||||| |
|
|
| T |
2476409 |
agaatgcaggacatccca |
2476426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 383 - 581
Target Start/End: Original strand, 1360 - 1554
Alignment:
| Q |
383 |
aaaaggtgaggttgttaacagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtc-gactgctctatagg |
481 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| ||| | || |||| ||||||||||||||||||||||||| | | || | ||| |
|
|
| T |
1360 |
aaaaggtgtggttgttaacagaatgtcaacatatttatcattac----gggtacttgcatatgtggcttagtgctcatcctagtttgcccactttctaga |
1455 |
T |
|
| Q |
482 |
gcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatat |
581 |
Q |
| |
|
||||||| | |||| ||||||| ||||||||||||||||| ||||||| |||||| | || ||||||||| || |||| ||| ||| |||||||||||| |
|
|
| T |
1456 |
gcttccctctatacctgttagtaatcaattttctaaagaatttaacatattattaatttcttggtaacttcatatgtt-ttattgcggaattaatcatat |
1554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 2289947 - 2289907
Alignment:
| Q |
494 |
acatgttagtcatcaattttctaaagaaattaacatgttat |
534 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
2289947 |
acatgttagtaattaattttctaaagaaattaacatattat |
2289907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University