View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_high_38 (Length: 260)
Name: NF11201_high_38
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_high_38 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 41941893 - 41942136
Alignment:
| Q |
13 |
aagggaagagagcggaagctcaattataacaaacatttaatttatatgacttgaattttttatgcatttgagttcattggttagataggttaaaattctc |
112 |
Q |
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| T |
41941893 |
aagggaagagagcggaagctcaattataacaaacatttaatttatatgacttgaattttttatgcatttgagttcattggttagataggttaaaattctc |
41941992 |
T |
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| Q |
113 |
acttgttttgtacggttgaataatatattcaacacaaattctaaaaacatgttttttcttttacatctataaagcacggatacggacgcctgatacgaca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41941993 |
acttgttttgtacggttgaataatatattcaacacaaattctaaaaacatgtttt---ttttacatctat-aagcacggatacggacgcctgatacgaca |
41942088 |
T |
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| Q |
213 |
cagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataa |
260 |
Q |
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| T |
41942089 |
cagacactgacacgcagtcaccgttaaaaatttgagaaaattacataa |
41942136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 24362302 - 24362230
Alignment:
| Q |
188 |
acggatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataa |
260 |
Q |
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| T |
24362302 |
acggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataa |
24362230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 24669383 - 24669464
Alignment:
| Q |
178 |
tctataaagcacggatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataa |
260 |
Q |
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| T |
24669383 |
tctataaagcatggatacggacacg-gacacgacacagacactgacacgctgacaccgttaataatttgaggaaattacataa |
24669464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 27944991 - 27945072
Alignment:
| Q |
179 |
ctataaagcacggatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataa |
260 |
Q |
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|||| |||||||||||||||| || || ||||||| ||||| ||||||| | |||| ||| |||||||||||||||||||| |
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| T |
27944991 |
ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataa |
27945072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 2425814 - 2425761
Alignment:
| Q |
207 |
acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataa |
260 |
Q |
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| T |
2425814 |
acgacacagatactgacacgccggcaccgttaataatttgagaaaatcacataa |
2425761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 20518295 - 20518376
Alignment:
| Q |
179 |
ctataaagcacggatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataa |
260 |
Q |
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| T |
20518295 |
ctatgaagcacggatacggatgccggatacgacacagacactgacacactaacaccactaacaatttgagaaaattacataa |
20518376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 25038182 - 25038099
Alignment:
| Q |
177 |
atctataaagcacggatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataa |
260 |
Q |
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|||||| |||||||||||||||| |||||||||||| || |||||| | ||||||||| |||||||||||||||||||| |
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| T |
25038182 |
atctatgaagcacggatacggacattgaatacgacacagatactgacacgttgacaccgttaataatttgagaaaattacataa |
25038099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 10649276 - 10649358
Alignment:
| Q |
177 |
atctataaagcacggatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacata |
259 |
Q |
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| T |
10649276 |
atctatgaagcacggatacggacaccggatacgacacaaacaatgatacgccgacaccgttagtaatttgataaaattacata |
10649358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 32839732 - 32839674
Alignment:
| Q |
202 |
ctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataa |
260 |
Q |
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| T |
32839732 |
ctgatacgacacagacatcgacatgctgacactgttaataatttgagaaaatcacataa |
32839674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 5441112 - 5441059
Alignment:
| Q |
207 |
acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataa |
260 |
Q |
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| T |
5441112 |
acgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcacataa |
5441059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 19820503 - 19820429
Alignment:
| Q |
179 |
ctataaagcacggatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaat |
253 |
Q |
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|||| |||||||||||||||| || || ||||||| ||||| ||||| | | ||||| ||| ||||||||||||| |
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| T |
19820503 |
ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaat |
19820429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 22013363 - 22013445
Alignment:
| Q |
178 |
tctataaagcacggatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataa |
260 |
Q |
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||||| |||||||||||||||| || || ||||||| ||||| ||||||| | ||| | ||| |||||| |||||||||||| |
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| T |
22013363 |
tctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaattacataa |
22013445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 135421 - 135340
Alignment:
| Q |
179 |
ctataaagcacggatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataa |
260 |
Q |
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|||| ||||| |||||||||| || |||||||||||||||| |||| | | ||| | ||| ||||||||||||| |||||| |
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| T |
135421 |
ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgacactgctaataatttgagaaaatcacataa |
135340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 192322 - 192277
Alignment:
| Q |
215 |
gacaccgacacgcagtcaccgttaaaaatttgagaaaattacataa |
260 |
Q |
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||||| ||||||| | ||||||||| |||||||||||||||||||| |
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| T |
192322 |
gacactgacacgccgacaccgttaataatttgagaaaattacataa |
192277 |
T |
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