View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_high_4 (Length: 644)
Name: NF11201_high_4
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 590; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 24 - 621
Target Start/End: Complemental strand, 33785152 - 33784555
Alignment:
| Q |
24 |
attgtcatacctagttcgttggttggtttgattgcgatttaaccaattgaaccatgacctgaaagtctcgctgatttgattttcgatccgatttttaaaa |
123 |
Q |
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| T |
33785152 |
attgtcatacctagttcgttggttggtttgatcgcgatttaaccaattgaaccatgacctgaaagtctcgctgatttgattttcgatccgatttttaaaa |
33785053 |
T |
|
| Q |
124 |
cattgatatgaaccaactcaaagtaactagacatgtaggcattgtttccatgcatcacattacatttgacctataataagaaactttaagtaatactagt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33785052 |
cattgatatgaaccaactcaaagtaactagacatgtaggcattgtttccatgcatcacattacatttgacctataataagaaactttaagtaatactagt |
33784953 |
T |
|
| Q |
224 |
aattactgaattttaaaatcaatagttaatctattcatgacttgatgctataatttattgaataagattgtattatcaagaagataaattagtaactaga |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33784952 |
aattactgaattttaaaatcaatagttaatctattcatgacttcatgctataatttattgaataagattgtattatcaagaagataaattagtaactaga |
33784853 |
T |
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| Q |
324 |
atgatgctaacaaacattattatgattaatgctgaattaaaaatgtgcacattttcaattttggtgatgcagatcattgaaagatggatatgaaactgaa |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33784852 |
atgatgctaacaaacattattatgattaatgctgaattaaaaatgtgcacattttcaattttggtgatgcagatcattgaaagatggatatgaaactgaa |
33784753 |
T |
|
| Q |
424 |
tgtggagaaaggggggttcaattatcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaag |
523 |
Q |
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| T |
33784752 |
tgtggagaaaggggggttcaattatcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaag |
33784653 |
T |
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| Q |
524 |
caacaagtgctttggatgtgcaatcagaacaagttgtgcaagaagcacttgataggattatggtaggaagaactaccattgttgtggcacatagactt |
621 |
Q |
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| T |
33784652 |
caacaagtgctttggatgtgcaatcagaacaagttgtgcaagaagcacttgataggattatggtaggaagaactaccattgttgtggcacatagactt |
33784555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 533
Target Start/End: Complemental strand, 33788455 - 33788370
Alignment:
| Q |
448 |
tcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgc |
533 |
Q |
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| T |
33788455 |
tcaggaggacaaaagcaaagaatagccattgcaagagctatcataaaaaatccagtaattcttctgcttgatgaagcaactagtgc |
33788370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 534
Target Start/End: Complemental strand, 3431274 - 3431179
Alignment:
| Q |
439 |
gttcaattatcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgct |
534 |
Q |
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| T |
3431274 |
gttcaattatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaatccaaagatccttctcttagacgaagcaactagtgct |
3431179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 2571745 - 2571696
Alignment:
| Q |
433 |
aggggggttcaattatcaggaggacaaaagcaaagaatagcaattgcaag |
482 |
Q |
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| T |
2571745 |
aggggagttcaaatgtcagggggacaaaagcaaagaattgcaattgcaag |
2571696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 533
Target Start/End: Original strand, 27810409 - 27810500
Alignment:
| Q |
442 |
caattatcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgc |
533 |
Q |
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| T |
27810409 |
caattatcaggaggacaaaagcagagaatagcaattgcaagggcaatgctgaaaaatccagcaattcttctcctagatgaggctacaagtgc |
27810500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 454 - 541
Target Start/End: Original strand, 5823515 - 5823602
Alignment:
| Q |
454 |
ggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttggatg |
541 |
Q |
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| T |
5823515 |
ggacaaaagcaaagaattgcaattgcaagggccatattgaagaatccaagaatccttcttcttgatgaagcaacaagtgcattggatg |
5823602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 454 - 541
Target Start/End: Complemental strand, 5832085 - 5831998
Alignment:
| Q |
454 |
ggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttggatg |
541 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||| | | || |||| || ||||| || ||||||||||||||||| ||||||| |
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| T |
5832085 |
ggacaaaagcaaagaattgcaattgcaagggcaatattgaagaacccaaaaatccttcttcttgatgaagcaacaagtgcattggatg |
5831998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 541
Target Start/End: Original strand, 5766122 - 5766209
Alignment:
| Q |
454 |
ggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttggatg |
541 |
Q |
| |
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||||||||||||||||| |||||||| ||||| ||| | | || |||| || ||||| || ||||||||||||||||| ||||||| |
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| T |
5766122 |
ggacaaaagcaaagaattgcaattgctagggcaatattgaagaacccaagaatccttcttctcgatgaagcaacaagtgcattggatg |
5766209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 479
Target Start/End: Complemental strand, 17872443 - 17872391
Alignment:
| Q |
427 |
ggagaaaggggggttcaattatcaggaggacaaaagcaaagaatagcaattgc |
479 |
Q |
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| T |
17872443 |
ggagaaagagggattcaattatcaggtggacaaaaacaaagaatagcaattgc |
17872391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 451 - 575
Target Start/End: Complemental strand, 41176907 - 41176783
Alignment:
| Q |
451 |
ggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttgga-tgtgcaatca |
549 |
Q |
| |
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||||||||||| |||||||||||||| |||||||| || || | ||||||| || ||||| || ||||| ||||||||||| ||||| | || ||||| |
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| T |
41176907 |
ggaggacaaaaacaaagaatagcaatagcaagggcaatgctaaaaaatccagcaattcttctcctcgatgaggcaacaagtgcattggactctg-aatca |
41176809 |
T |
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| Q |
550 |
gaacaagttgtgcaagaagcacttga |
575 |
Q |
| |
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||| | | ||||||||||||||||| |
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| T |
41176808 |
gaaaagctggtgcaagaagcacttga |
41176783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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