View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_high_42 (Length: 242)
Name: NF11201_high_42
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_high_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 10165055 - 10165279
Alignment:
| Q |
18 |
aattaaatctataacaatcaatctaagtgattttcacacacataatagacatgtataactataagtaccagtaattaagaaacctttgatgaaactaact |
117 |
Q |
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| T |
10165055 |
aattaaatctgttacaatcaatctaagtgattttcacacacataatagacatgtataactataagtaccagtaattaagaaacctttgatgaaactaact |
10165154 |
T |
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| Q |
118 |
tgttcaatctcatgattcccataactagctggattttccattccatctcgaaaaatggtatggaaatttcccaataccaaaatcaacgaacaacaatggc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10165155 |
tgttcaatctcatgattcccataactagctggattttccattccatctcaaaaaatggtatggaattttcccaataccaaaatcaacgaacaacaatggc |
10165254 |
T |
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| Q |
218 |
atcaatcataaagatccttaatctt |
242 |
Q |
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||||||||||||||||||| ||||| |
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| T |
10165255 |
atcaatcataaagatccttgatctt |
10165279 |
T |
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