View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_high_45 (Length: 240)
Name: NF11201_high_45
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 18889973 - 18890178
Alignment:
| Q |
17 |
cagagagaacaacaggaatagcttgagcttgaactaacgttggatcttcaaaacccattctttctgttcaaaaagatacaaaatttggataatttaagct |
116 |
Q |
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| T |
18889973 |
cagagagaacaacaggaatagcttgagcttgaactaacgttggaccttcaaaacccattctttctgttcaaaaagatacaaaatttggataatttaagct |
18890072 |
T |
|
| Q |
117 |
tgctaataatttagaaaacgaaataaagagataggaatgaaaaa----atgtacctcgaagttggtcacataaggtttggtgaagaccaaggctagaaaa |
212 |
Q |
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|||||||||||||||| |||||||||||||||| ||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18890073 |
tgctaataatttagaacacgaaataaagagataagaaggaaaaagaaaagttaccacgaagttggtcacataaggtttggtgaagaccaaggctagagaa |
18890172 |
T |
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| Q |
213 |
ggaaca |
218 |
Q |
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|||||| |
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| T |
18890173 |
ggaaca |
18890178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 21842859 - 21842932
Alignment:
| Q |
17 |
cagagagaacaacaggaatagcttgagcttgaactaacgttggatcttcaaaacccattctttctgttcaaaaa |
90 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||| |||| |
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| T |
21842859 |
cagagagaacaacaggaatagcttgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaa |
21842932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 21898722 - 21898795
Alignment:
| Q |
17 |
cagagagaacaacaggaatagcttgagcttgaactaacgttggatcttcaaaacccattctttctgttcaaaaa |
90 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||| |||| |
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| T |
21898722 |
cagagagaacaacaggaatagcttgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaa |
21898795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 21843020 - 21843074
Alignment:
| Q |
164 |
tacctcgaagttggtcacataaggtttggtgaagaccaaggctagaaaaggaaca |
218 |
Q |
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|||| |||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
21843020 |
taccacgaagttggtcacataaggtttggtgaagaccgagactagaaaaggaaca |
21843074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 21898883 - 21898937
Alignment:
| Q |
164 |
tacctcgaagttggtcacataaggtttggtgaagaccaaggctagaaaaggaaca |
218 |
Q |
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|||| |||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
21898883 |
taccacgaagttggtcacataaggtttggtgaagaccgagactagaaaaggaaca |
21898937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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