View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_high_6 (Length: 601)
Name: NF11201_high_6
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 16 - 596
Target Start/End: Original strand, 38834933 - 38835520
Alignment:
| Q |
16 |
caaaatctagtttcactaaagcataaaatttcagttacattgtagtgcaattgcgggaatagtctagttgacttctacaaaatctgataattctgcatcc |
115 |
Q |
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| T |
38834933 |
caaaatctagtttcactaaagcataaaatttcagttacattgtagtgcaattgcgggaatagtctagttgacttctacaaaatctgataattctgcatac |
38835032 |
T |
|
| Q |
116 |
tcatcggaatcattgtcactctcgtatccactcactacatatttgttttgattaggattagccctgtgaggcttagcccttgctggctgcagtgcgatct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
38835033 |
tcatcggaatcattgtcactctcgtatccactcactacatatttgttttgattaggattagccccgtgaggcttagcccttgctggctgcggtgcgatct |
38835132 |
T |
|
| Q |
216 |
caaccacctcattctttgctataggagagttagaagcagaaccagcagacaaatcttcaatttgatttgtatccttgttagcagcactgtccagtataga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38835133 |
caaccacctcattctttgctataggagagttagaagcagaaccagcagacaaatcttcaatttgatttgtatccttgttagcagccctgtccagtataga |
38835232 |
T |
|
| Q |
316 |
accgctacttttcttgttaaatggag-ctccctcatcttcctcactttcttctctggtgaagtagctgtactttcagctgactgcaacatatcagtaaat |
414 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38835233 |
accgctacttttcttgttaaatggagactccctcatcttcctcactttcttctctggtgaagtagctgtactttcagctgactaaaacatatcagtaaat |
38835332 |
T |
|
| Q |
415 |
aatttttgacccaatgtttgtctggtgcctacatttcttttcttgggggcggtagatgccgtcttggcattttgagcagcaggctttctccctcccttct |
514 |
Q |
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| T |
38835333 |
aatttttgacccaatgtttgtctggtgcctacatttcttttcttgggggcggtagatgccgtcttggcattttgagcagcaggctttctccctcccttct |
38835432 |
T |
|
| Q |
515 |
taactagggcagccttctgttgtacttcgaagtcg------tcatcaatgacttcattatcactatctgatttcaaacctatgctact |
596 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
38835433 |
taactagggcagccttctattgtacttcgaagtcgtcatcatcatcaatgacttcattatcactatctgattccaaacctatggtact |
38835520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 87 - 461
Target Start/End: Original strand, 9869448 - 9869823
Alignment:
| Q |
87 |
cttctacaaaatctgataattctgcatcctcatcg---gaatcattgtcactctcgtatccactcactacatatttgttttgattaggattagccctgtg |
183 |
Q |
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||||| ||||||||||||| |||||||||||||| || ||||||||||||||| || |||| ||||||||||| ||||| || |||| ||||| || |
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| T |
9869448 |
cttcttcaaaatctgataactctgcatcctcatcatcagactcattgtcactctcggattcactgactacatatttcatttgagtacgattggccctctg |
9869547 |
T |
|
| Q |
184 |
aggcttagcccttgctggctgcagtgcgatctcaaccacctcattctttgctataggagagttagaagcagaaccagcagacaaatcttcaatttgattt |
283 |
Q |
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||| |||||||||||||||| |||| |||||||||||||||| || ||| ||||||||||||||| ||| || | ||||||||| ||||| || || |
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| T |
9869548 |
aggtctagcccttgctggctgaggtgcaatctcaaccacctcatcctctgcagtaggagagttagaagtagagccctcggacaaatctgcaattggactt |
9869647 |
T |
|
| Q |
284 |
gtatccttgttagcagcactgtccagtatagaaccgctacttttcttgttaaatggag-ctccctcatcttcctcactttcttctctggtgaagtagctg |
382 |
Q |
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||||| ||||||||| || ||| ||||||||| ||| |||||||||||||| | ||||||||| || |||||||||||||||||||| ||| || |
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| T |
9869648 |
atatccatgttagcagttttgcccaatatagaacc---actcttcttgttaaatggtgactccctcatttttctcactttcttctctggtgatgtaccta |
9869744 |
T |
|
| Q |
383 |
tactttcagctgactgcaacatatcagtaaataatttttgacccaatgtttgtctggtgcctacatttcttttcttggg |
461 |
Q |
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|||||||||||| ||||||||||||||| || |||||||||||||||||| | || |||||||||||||||||||||| |
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| T |
9869745 |
tactttcagctggctgcaacatatcagttaacaatttttgacccaatgttgatttgctgcctacatttcttttcttggg |
9869823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 476 - 554
Target Start/End: Original strand, 9869937 - 9870015
Alignment:
| Q |
476 |
tcttggcattttgagcagcaggctttctccctcccttcttaactagggcagccttctgttgtacttcgaagtcgtcatc |
554 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||| || | ||||| || | ||| ||||||||||||||||| |
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| T |
9869937 |
tcttggcattttgagcagcaggctttctcccacccttcttagctggagcagcgttttcttgaacttcgaagtcgtcatc |
9870015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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