View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_high_7 (Length: 568)
Name: NF11201_high_7
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 212 - 552
Target Start/End: Complemental strand, 29800161 - 29799821
Alignment:
| Q |
212 |
tagtttcttgccagtaaaacgaaaagacgtatagtgctcatctcaatgatagttttaataataaatttgatatattttagaaatgatgaggtgttttcct |
311 |
Q |
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| T |
29800161 |
tagtttcttgccagtaaaacgaaaagatgtatagtgctcatctcaatgatagttttaataataaatttgatatattttagaaatgatgtggtgttttcct |
29800062 |
T |
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| Q |
312 |
gcattaactaatatatatcttcaatgtgtttgttgtccaaatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatg |
411 |
Q |
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| T |
29800061 |
gcattaactaatatatatcttcaatgtgtttgttgtccaaatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatg |
29799962 |
T |
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| Q |
412 |
ttcaaaggcaatctagagaagacattaaacttgataatctaacaattcctaatgggaccaatatgtggatcgacgttgttgcaatgcaccatgactcatc |
511 |
Q |
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| T |
29799961 |
ttcaaaggcaatctagagaagacattaaacttgataatctaacaattcctaatgggaccaatatgtggatcgacgttgttgcaatgcaccatgactcatc |
29799862 |
T |
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| Q |
512 |
attgtggggagaaaatgtaaatgagtttcgaccagaaagat |
552 |
Q |
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| T |
29799861 |
attgtggggagaaaatgtaaatgagtttcgaccagaaagat |
29799821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 29800359 - 29800215
Alignment:
| Q |
15 |
cacgttgatctttgttggaagtctattttgaattagcctccaagcaaatgatgacaacttaagagaaacttatttgttccaagtcaagttgtgacgaggt |
114 |
Q |
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| T |
29800359 |
cacgttgatctttgttggaagtctattttgaattagcctccaaacaaatgatgacaacttaagagaaacttatttgttccaagtcaagttgtgacgaggt |
29800260 |
T |
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| Q |
115 |
aaaggctcgttgtcaaaaagcatgtgataaactcctttggtataa |
159 |
Q |
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| T |
29800259 |
aaaggctcattgtcaaaaagcatgtgataaactcctttggtataa |
29800215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 523
Target Start/End: Complemental strand, 45420267 - 45420095
Alignment:
| Q |
351 |
aatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatgttcaaaggcaatctagagaagacattaaacttgataatc |
450 |
Q |
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| T |
45420267 |
aatatgcagatgaaatgggtgatgaatgaagttctaagactatacccaccagcaccaaatgtgcaaagacaagcaagagaagacattcaagttgatgatg |
45420168 |
T |
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| Q |
451 |
taacaattcctaatgggaccaatatgtggatcgacgttgttgcaatgcaccatgactcatcattgtggggaga |
523 |
Q |
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| T |
45420167 |
taacagtgcctaatggaaccaacatgtggattgatgtagtagcgatgcaccatgacccagaattatggggaga |
45420095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 357 - 538
Target Start/End: Complemental strand, 45410952 - 45410771
Alignment:
| Q |
357 |
cagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatgttcaaaggcaatctagagaagacattaaacttgataatctaacaa |
456 |
Q |
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| T |
45410952 |
cagatgaaatgtgtgatgaatgaagttctaagactatacccaccagcaccaaatgtgcaaagacaagcaagagaagatattcaagttgatgatgtaacag |
45410853 |
T |
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| Q |
457 |
ttcctaatgggaccaatatgtggatcgacgttgttgcaatgcaccatgactcatcattgtggggagaaaatgtaaatgagtt |
538 |
Q |
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| T |
45410852 |
tgcctaatggaacaaacatgtggattgatgtagtagcgatgcaccatgacccagaattatggggagatgatgtgaatgagtt |
45410771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 351 - 506
Target Start/End: Complemental strand, 26835458 - 26835303
Alignment:
| Q |
351 |
aatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatgttcaaaggcaatctagagaagacattaaacttgataatc |
450 |
Q |
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||||| |||||||| |||||||||||||||| ||| || || |||||| || |||||||||| ||||| ||| | ||||||||||||||| |||||||| |
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| T |
26835458 |
aatatgcagatgaaatgggtgatgaatgaagttttaagactatacccaccatcaccaaatgtgcaaagacaaacaagagaagacattaaagttgataatg |
26835359 |
T |
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| Q |
451 |
taacaattcctaatgggaccaatatgtggatcgacgttgttgcaatgcaccatgac |
506 |
Q |
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| T |
26835358 |
taacagtgcctaatggaaccaacatgtggattgatgtagtagcaatgcaccatgac |
26835303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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