View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_high_9 (Length: 521)
Name: NF11201_high_9
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_high_9 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 521
Target Start/End: Original strand, 25351680 - 25352188
Alignment:
| Q |
13 |
atatttgtcattgaatattgtgaagaatacaatgttgttcctttttccttactttggtgtctaacaaaccaaatgaactaacaaagnnnnnnnnnnnnng |
112 |
Q |
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| T |
25351680 |
atattggtcattgagttttgtgaagaatacgatgttgttcctttttccttactttggtgtctgacaacccaaatgaaccaacaaagaaaaaaacaaaaag |
25351779 |
T |
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| Q |
113 |
actcaatgcctataattcttctaagaaatcaaaaggacaagagcttagagtcttttaattttcttctttgtggttcatttgatttgatattacttaaagt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25351780 |
actcaatgcctataattcttctaagaaatcaaaaggacaagagtttggagtctttttattttcttctttgtggttcatttgatttgatattacttaaagt |
25351879 |
T |
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| Q |
213 |
ctttctcttaggtctctcctaaaataacaaacacaataaaaagttagagtagtaaaaaagttatagacgttattggtatcataaaagtcctaatcaaagc |
312 |
Q |
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| T |
25351880 |
ctttcccttaggcctctcctaaaataacaaatacaataaaaagttagagtaataaaaaagttatacacgttattcgtatcataaaagtcctaatcaaagc |
25351979 |
T |
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| Q |
313 |
acaaggaatggaattttttcaagcttttggaaattccatcccaacttcttaaggcatgcatgcaacttccaactttcggatcatttaactcattgtcgtc |
412 |
Q |
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| T |
25351980 |
aagaggaatggaattttttcaagcttttggaaattccatcccaacttcttaaggcatgcatgcaacttccaactttcggatcatttaactcattgtcgtc |
25352079 |
T |
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| Q |
413 |
gtcgtcatcatcataatcatcatcggtaatcacaattgggcaggttgcatctcttccaggaccattatatacnnnnnnnaaggccaaggttctcaatcta |
512 |
Q |
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| T |
25352080 |
gtcgtcatcatcataatcatcatcgttaatcacaattgggcaggttgcatctcttccaggaccattatatacttttttgaaggccaaggttctcaatcta |
25352179 |
T |
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| Q |
513 |
ttactagtc |
521 |
Q |
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| T |
25352180 |
ttactagtc |
25352188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 290 - 403
Target Start/End: Original strand, 25356604 - 25356718
Alignment:
| Q |
290 |
atcataaaagtcctaatcaaagcacaaggaatggaatttt-ttcaagcttttggaaattccatcccaacttcttaaggcatgcatgcaacttccaacttt |
388 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25356604 |
atcataaaagtcctaatcaaagcatgaggaatggaatttttttcaagcttttcgaaattccatcccaacttcttaaggcatgcatgcaacttccaacttt |
25356703 |
T |
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| Q |
389 |
cggatcatttaactc |
403 |
Q |
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| T |
25356704 |
cggatcatttaactc |
25356718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 289 - 521
Target Start/End: Original strand, 25349418 - 25349649
Alignment:
| Q |
289 |
tatcataaaagtcctaatcaaagcacaaggaatggaattttttcaagcttttggaaattccatcccaacttcttaaggcatgcatgcaacttccaacttt |
388 |
Q |
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||||||||||||||||| |||||| | |||| | |||| |||| ||| |||||||||||||| ||| |||||||| |||| ||||||||||||||| |
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| T |
25349418 |
tatcataaaagtcctaacgaaagcatgatgaatctatttttgtcaaacttctggaaattccatccgaacctcttaaggtttgcacgcaacttccaacttt |
25349517 |
T |
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| Q |
389 |
cggatcatttaactcattgtcgtcgtcgtcatcatcataatcatcatcggtaatcacaattgggcaggttgcatctcttccaggaccattatatacnnnn |
488 |
Q |
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| T |
25349518 |
gggatcatataattcttcgtcttcatcatcatcatcataatcatcatcgttaatcacaattggactagttgcatctctccca-gaccatcatatactttt |
25349616 |
T |
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| Q |
489 |
nnnaaggccaaggttctcaatctattactagtc |
521 |
Q |
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| T |
25349617 |
ttgaaggccaaggttctcaatctattactagtc |
25349649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 417 - 521
Target Start/End: Original strand, 25356753 - 25356857
Alignment:
| Q |
417 |
tcatcatcataatcatcatcggtaatcacaattgggcaggttgcatctcttccaggaccattatatacnnnnnnnaaggccaaggttctcaatctattac |
516 |
Q |
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||||||||||| ||||||||| |||||| |||||| | || ||||||| | |||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
25356753 |
tcatcatcatattcatcatcgttaatcaaaattggactggctgcatctttcccaggaccatcatatacttttttgaaggccaaggttctcaatctattac |
25356852 |
T |
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| Q |
517 |
tagtc |
521 |
Q |
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||||| |
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| T |
25356853 |
tagtc |
25356857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 25361284 - 25361392
Alignment:
| Q |
289 |
tatcataaa-agtcctaatcaaagcacaaggaatggaattttttcaagcttttggaaattccatcccaacttcttaaggcatgcatgcaacttccaactt |
387 |
Q |
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||||||||| |||||||| ||||||| ||||||| |||| |||| || ||||||||| |||| |||||||||||||||||||| |||||||||| || |
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| T |
25361284 |
tatcataaagagtcctaaacaaagcatgaggaatgattttttgtcaaactcttggaaatttcatcgcaacttcttaaggcatgcatacaacttccaattt |
25361383 |
T |
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| Q |
388 |
tcggatcat |
396 |
Q |
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|| |||||| |
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| T |
25361384 |
tctgatcat |
25361392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 25356511 - 25356584
Alignment:
| Q |
214 |
tttctcttaggtctctcctaaaataacaaacacaataaaaagttagagtagtaaaaaagttatagacgttattgg |
288 |
Q |
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| T |
25356511 |
tttcccttaggtctctcc-aatataacaaacacaataacaagttagagtaataaaaaagttttacacgttattgg |
25356584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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