View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11201_low_11 (Length: 520)
Name: NF11201_low_11
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 162 - 506
Target Start/End: Complemental strand, 8809092 - 8808748
Alignment:
| Q |
162 |
cttctctctttttgtaaggtacgcatccttacattgttgacagatctgacattccgtaattctcaaacttagatatnnnnnnntgtttgatatctcctca |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8809092 |
cttctctctttttgtaaggtacgcatccttacattgttgacagatctgacattccgtaattctcaaacttagatataaaaaaatgtttgatatctcctca |
8808993 |
T |
|
| Q |
262 |
ttgtgtgctccaacttacatttccctatgtatattcaccatactctatgatactcatactactatatgctacgtaactaagtctagtccaattttcaacg |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8808992 |
ttgtgtgctccaacttacatttccctatgtatattcaccatactctatgatactcatactactatatgctacgtaactaagtctagtccaattttcaacg |
8808893 |
T |
|
| Q |
362 |
tggttgaaattctcacaccccttggccacgctcactaagcacatactcccacatattatttttgtaccaattgcaccctattccacagaccaatcgtctc |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8808892 |
tggttgaaattctcacaccccttggccacgctcactaagcacatactcccacatattatttttgtaccaattgcaccctattccacagaccaatcgtctc |
8808793 |
T |
|
| Q |
462 |
actcttctccaacttctatgtcttcctcattgcccaatatacctc |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8808792 |
actcttctccaacttctatgtcttcctcattgcccaatatacctc |
8808748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 8809232 - 8809154
Alignment:
| Q |
18 |
caaacaaggtctaaattaagctaaccttagcgcttatttgggctttacgtcctaccatcattttctgcagcaactcttg |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8809232 |
caaacaaggtctaaattaagctaaccttagcgcttatttgggctttacgtcctaccatcattttctgcagcaactcttg |
8809154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University