View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_14 (Length: 507)
Name: NF11201_low_14
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 8 - 489
Target Start/End: Complemental strand, 44892854 - 44892373
Alignment:
| Q |
8 |
tgttttgtttgtgtatatgtttcgtagcacaataagttgacgaaatcacaatggtacagtgataatggaaactctaaaatgttgactttgttatgtcaaa |
107 |
Q |
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| T |
44892854 |
tgttttgtttgtgtatatgtttcgtagcacaataagttgacgaaatcacaatggtacagtgataatggaaactctaaaatgttgactttgttatgtcaaa |
44892755 |
T |
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| Q |
108 |
tgagcacgaagaataggaactcaccaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgc |
207 |
Q |
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| T |
44892754 |
tgagcacgaagaataggaactcaccaatgcgtttttgtggatgattatttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgc |
44892655 |
T |
|
| Q |
208 |
gatgggtgttccatttaagatatccaaaccttttttagcatggtttagtgattgaaggacagtaacaagagcagagcgagcatcaccgtcttcatataca |
307 |
Q |
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| T |
44892654 |
gatgggtgttccatttaagatatccaaaccttctttagcatggtttagtgattgaaggacagtaacaagagcagagcgagcatcaccgtcttcatataca |
44892555 |
T |
|
| Q |
308 |
ctagtcaagtgactgtgtatctcaattactttcttgtgatcctcttcagccacctcatttattacccctttaaaccaatcaaagaaaccttgttcaccag |
407 |
Q |
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| T |
44892554 |
ctagtcaagtgactgtgtatctcaattactttcttgtgatcctcttcagccacctcatttattacccctttaaaccaatcaaagaaaccttgttcaccag |
44892455 |
T |
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| Q |
408 |
ccatccagtaaaaataagcctttctagttttaaagttactcaaatcagttttcttgtgttgtgatggtcttgatgatttacc |
489 |
Q |
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| T |
44892454 |
ccatccagtaaaaataagcctttctagttttaaagttactcaaatcagttttcttgtgttctgatggtcttgatgatttacc |
44892373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 120 - 486
Target Start/End: Complemental strand, 44901395 - 44901029
Alignment:
| Q |
120 |
ataggaactcaccaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| | |||||||| |||| ||| || |||| ||||||| |||| || ||||||||| |
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| T |
44901395 |
ataggaactcaccaatgcgtttttgtggatgattaagtgcaatgcgcttgtagacgctgcaccattttggtctagcaaagtgagacttgacgggtgttcc |
44901296 |
T |
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| Q |
220 |
atttaagatatccaaaccttttttagcatggtttagtgattgaaggacagtaacaagagcagagcgagcatcaccgtcttcatatacactagtcaagtga |
319 |
Q |
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| T |
44901295 |
agtcaagatatccacaccatttttagcatggtttagtgattgaagcatagcaataagagcagattgagcatcaccgtcttcatatacactagtcaagtga |
44901196 |
T |
|
| Q |
320 |
ctgtgtatctcaattactttcttgtgatcctcttcagccacctcatttattacccctttaaaccaatcaaagaaaccttgttcaccagccatccagtaaa |
419 |
Q |
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| T |
44901195 |
ctgtggatctcaattactctcctacggtcttcttccaccacctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaa |
44901096 |
T |
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| Q |
420 |
aataagcctttctagttttaaagttactcaaatcagttttcttgtgttgtgatggtcttgatgattt |
486 |
Q |
| |
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| T |
44901095 |
aataagcctttctagttttgaagttatttaaaccggttttcttgcgttgtgatgatcttggtgattt |
44901029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 115 - 488
Target Start/End: Complemental strand, 44918150 - 44917777
Alignment:
| Q |
115 |
gaagaataggaactcaccaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggt |
214 |
Q |
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||||||| ||||||||||| |||| ||||||||||||| |||||| | ||||||||||| |||||||| ||| ||||||| |||| || | || |
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| T |
44918150 |
gaagaatgagaactcaccaacgcgtgtttgtggatgattaagtgcaatgcgcttgtagacactacgccaattaggtttagcaaagtgagacttgacgcgt |
44918051 |
T |
|
| Q |
215 |
gttccatttaagatatccaaaccttttttagcatggtttagtgattgaaggacagtaacaagagcagagcgagcatcaccgtcttcatatacactagtca |
314 |
Q |
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|||||| | |||||||| ||| ||||||||||| || |||||||| || | || || ||||||||||||||||||||| |||||||| |||||||| |
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| T |
44918050 |
gttccagagacgatatccacaccatttttagcatgattaagtgattggagcatagcaataagagcagagcgagcatcaccctcttcataaacactagtac |
44917951 |
T |
|
| Q |
315 |
agtgactgtgtatctcaattactttcttgtgatcctcttcagccacctcatttattacccctttaaaccaatcaaagaaaccttgttcaccagccatcca |
414 |
Q |
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| | | |||||| |||||||||| | | ||||| ||||||||||||||||| ||||| ||||||||||||||||| |||| ||||| | || | ||| |
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| T |
44917950 |
aataattgtgtagctcaattactcccctatgatcatcttcagccacctcattcattactcctttaaaccaatcaaatgaaccctgttctctagtaaccca |
44917851 |
T |
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| Q |
415 |
gtaaaaataagcctttctagttttaaagttactcaaatcagttttcttgtgttgtgatggtcttgatgatttac |
488 |
Q |
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||||||||||||| | ||||||||||| || ||||| | ||| ||||||||||||||||||| | |||||||| |
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| T |
44917850 |
gtaaaaataagccctcttagttttaaagctattcaaaccggttctcttgtgttgtgatggtctcggtgatttac |
44917777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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