View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_15 (Length: 493)
Name: NF11201_low_15
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 8818456 - 8818930
Alignment:
| Q |
1 |
cccaaagaaatcccaaatgctaatcaaagaaatgaacaaagaaacaccatggtaaccaagtgctaatcattagttccatcttattgataacacatagtcc |
100 |
Q |
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| T |
8818456 |
cccaaagaaatcccaaatgctaatcaaagaaatgaacaaagaaacaccatggtaaccaagtgctaatcattagttccatcttattgataacacatagtcc |
8818555 |
T |
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| Q |
101 |
tgatttccaattctgaaaattaaattgatcctcattataaaaatcaaacatcataaatatatggtgaaactacgtttgccattgcaaactcaagtttgag |
200 |
Q |
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| T |
8818556 |
tgatttccaattctgaaaattaaattgatcctcattataaaaatcaaacatcataaatatatggtgaaactacgtttgccattgcaaactcaagtttgag |
8818655 |
T |
|
| Q |
201 |
cttcccacaatagagccaaacaagtataaaaacaactcatgtattacttcttatatacacattaacgatacatacacaacttttttcaaattcgcatgac |
300 |
Q |
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| T |
8818656 |
cttcccacaatagagccaaacaagcataaaaacaactcatgtattacttcttatat--acattaacgatacatacacaacttttttcaaattcacgtgac |
8818753 |
T |
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| Q |
301 |
ctttgattaacacacattggaaatcatcttctaactaagctataaaactcttctnnnnnnnttcctaagtctatgcgnnnnnnngtccagaaacaccatc |
400 |
Q |
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| T |
8818754 |
ctttgattaacacacattggaaatcatcttctaactaagctataaaactcttctaaaaaaattcctaagtctatgcgaaaaaaagtccagaaacaccatc |
8818853 |
T |
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| Q |
401 |
atctcagtgttgaacttgagaattgacaagatttctctctgtatgtatcttggaatatacattctttgttctaaatg |
477 |
Q |
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| T |
8818854 |
atctcagtgttgaacttgagaattgacaagatttctctctgtatgtatcttggaatatacattctttgttctaaatg |
8818930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 8819809 - 8819870
Alignment:
| Q |
2 |
ccaaagaaatcccaaatgctaatcaaagaaatgaacaaagaaacaccatggtaaccaagtgc |
63 |
Q |
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||||||||| |||||||||| || || |||||||||||||||||| |||||||||||||||| |
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| T |
8819809 |
ccaaagaaaccccaaatgcttatgaatgaaatgaacaaagaaacatcatggtaaccaagtgc |
8819870 |
T |
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