View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_16 (Length: 481)
Name: NF11201_low_16
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Complemental strand, 49627501 - 49627054
Alignment:
| Q |
17 |
aattaccagcttccaaaatggtcatcttttcccccaaattttacttgcaaacgatagccccgcctaggtatatgaacttattctccatcgattaggattg |
116 |
Q |
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| T |
49627501 |
aattaccagcttccaaaatggtcatcttttcccccaaattttacttgcaaacgatagccccgcctaggtatatgaacttattctccatcgattaggattg |
49627402 |
T |
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| Q |
117 |
agttnnnnnnnncaaaagaaagcctaaatatgcttataagaaggtgcagaattttcttttaatacttgagtttatcttaactttgtttagaattgattta |
216 |
Q |
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| T |
49627401 |
agttaaaaaaaacaaaagaaagcctaaatatgcttataagaaggtgcagaattttcttttaatacttgagtttatcttaactttgtttagaattgattta |
49627302 |
T |
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| Q |
217 |
atcggggaatatgtattgattttatgattaaagtattgaacataaagaatgttggatcaattctcgcataagactatttaaaagaatttttgtcattcct |
316 |
Q |
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| T |
49627301 |
atcggggaatatgtattgattttatgattaaagtattgaacataaagaatgttggatcaattctcgcataagactatttaaaagaatttttgtcattcct |
49627202 |
T |
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| Q |
317 |
tc-nnnnnnnnnggaatttttgtcatattcctttgttacaaacaacaaaattaaaaaggagaaaagacaatgtcttccaatttaagtgtcaaaaacaata |
415 |
Q |
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| T |
49627201 |
tcaaaaaaaaaaggaatttttgtcatattcctttgttacaaacaacaaaattaaaaaggagaaaagacaatgtcttccaatttaagtgtcaaaaacaata |
49627102 |
T |
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| Q |
416 |
tgtagattctggcctttatacggggtgatgaatgtagcgggttctgtg |
463 |
Q |
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| T |
49627101 |
tgtagattctggcctttatacggggtgatgaatgtagcgggttctgtg |
49627054 |
T |
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