View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_17 (Length: 481)
Name: NF11201_low_17
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 7 - 464
Target Start/End: Complemental strand, 52930496 - 52930039
Alignment:
| Q |
7 |
gagatgaagcgaaaggagagaggcgacgccaaccgtcacaccggaaaaaagaagtcgaagaagacttccgacaatcaacggaagaaaacctgtcctcgat |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52930496 |
gagaagaagcgaaaggagagaggcgacgccaaccgtcacaccggaaaaaagaagtcgaagaggacttccgacaatcaacggaagaaaacctgtcctcgat |
52930397 |
T |
|
| Q |
107 |
tgccttcatcattgaaaaaagagatcgaacacttaaaccctacccccgtcgatgtcaatgaaatcgacagcgacgtttacgaatacgaagaagaactacc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52930396 |
tgccttcatcattgaaaaaagagatcgaacacttaaaccctacccccgtcgatgtcaatgaaatcgacagcgacgtttacgaatacgaagaagaactacc |
52930297 |
T |
|
| Q |
207 |
cgaggaagagtccagcaagaataaacgttacgaccctgtatctgtcaatgataataacgacctttcttctgattttgaggtatgttatgaattgaacaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52930296 |
cgaggaagagtccagcaagaataaacgttacgaccctgtatctgtcaatgataataacgacctttcttctgattttgaggtatgttatgaattgaacaat |
52930197 |
T |
|
| Q |
307 |
aagttgtttatccaaatatatccttaatttctgatttgtctgaatccatttgtttgttaggatgtgaatgtacaatctgatgatgacggcaacaatatta |
406 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52930196 |
aagttgtttatccaaatctatccttaatttctgatttgtctgaatccatttgtttgttaggatgtgaatgtacaatctgatgatgacggcaacaatatta |
52930097 |
T |
|
| Q |
407 |
ttggaattaagaggaatgaaattgtttctgatgatgattctcgggaggaagatgatgg |
464 |
Q |
| |
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| T |
52930096 |
ttggaattaagaggaatgaaattgtttctgatgatgattctcgggaggaagatgatgg |
52930039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 44371949 - 44371674
Alignment:
| Q |
12 |
gaagcgaaaggagagaggcgacgccaaccgtcacaccggaaaaaagaagtcgaagaagacttccgacaatcaacggaagaaaacctgtcctcgattgcct |
111 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
44371949 |
gaagcgaaaggagagaggcgacgctaaccgccacaccgcaaaaaagaagtcgaagaagacttccgacaatcaacggaagaaaactggtcctcgtttgcct |
44371850 |
T |
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| Q |
112 |
tcatcattgaaaaaagagatcgaacacttaaaccctacccccgtcgatgtcaatgaaatcgacagcgacgtttacgaatacgaagaagaactacccgagg |
211 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||| || |||||| |||| ||||||||||| |||||||||||||||||||||| ||| || | |
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| T |
44371849 |
tcatctttgaaaaaagagattcaacacttaaaccctacccctgttgatgtcgatgatatcgacagcgatgtttacgaatacgaagaagaacaacctgaag |
44371750 |
T |
|
| Q |
212 |
aagagtccagcaagaataaacgttacgaccctgtatctgtcaatgataataacgacctttcttctgattttgaggt |
287 |
Q |
| |
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| T |
44371749 |
aagaatccagaaagaataagcgttacgaccctgtttctgttaatgatgataatgacctttcttctgatttcgaggt |
44371674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 44380804 - 44380529
Alignment:
| Q |
12 |
gaagcgaaaggagagaggcgacgccaaccgtcacaccggaaaaaagaagtcgaagaagacttccgacaatcaacggaagaaaacctgtcctcgattgcct |
111 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
44380804 |
gaagcgaaaggagagaggcgacgctaaccgccacaccgcaaaaaagaagtcgaagaagacttccgacaatcaacggaagaaaactggtcctcgtttgcct |
44380705 |
T |
|
| Q |
112 |
tcatcattgaaaaaagagatcgaacacttaaaccctacccccgtcgatgtcaatgaaatcgacagcgacgtttacgaatacgaagaagaactacccgagg |
211 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||| || |||||| |||| ||||||||||| |||||||||||||||||||||| ||| || | |
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| T |
44380704 |
tcatctttgaaaaaagagattcaacacttaaaccctacccctgttgatgtcgatgatatcgacagcgatgtttacgaatacgaagaagaacaacctgaag |
44380605 |
T |
|
| Q |
212 |
aagagtccagcaagaataaacgttacgaccctgtatctgtcaatgataataacgacctttcttctgattttgaggt |
287 |
Q |
| |
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|||| ||||| |||||||| |||||||||||||| ||||| |||||| |||| ||||||||||||||||| ||||| |
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| T |
44380604 |
aagaatccagaaagaataagcgttacgaccctgtttctgttaatgatgataatgacctttcttctgatttcgaggt |
44380529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 463
Target Start/End: Complemental strand, 44371629 - 44371496
Alignment:
| Q |
340 |
atttgtctgaatc---catttgtttgtt-aggatgtgaatgtacaatctgatgatga------cggcaacaatattattggaattaagaggaatgaaatt |
429 |
Q |
| |
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||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |||| || || ||||||| | |||||||| |||||| |
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| T |
44371629 |
atttgtctgaatcattcatttgtttgtttaggatgagaatgtacaatctgatgatgacgacggcggctacgattttattggtaaaaagaggaaggaaatt |
44371530 |
T |
|
| Q |
430 |
gtttctgatgatgattctcgggaggaagatgatg |
463 |
Q |
| |
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| ||| |||||||||| | ||||||||||||||| |
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| T |
44371529 |
gattcagatgatgattatggggaggaagatgatg |
44371496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 463
Target Start/End: Complemental strand, 44380484 - 44380351
Alignment:
| Q |
340 |
atttgtctgaatc---catttgtttgtt-aggatgtgaatgtacaatctgatgatga------cggcaacaatattattggaattaagaggaatgaaatt |
429 |
Q |
| |
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||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |||| || || ||||||| | |||||||| |||||| |
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| T |
44380484 |
atttgtctgaatcattcatttgtttgtttaggatgagaatgtacaatctgatgatgacgacggcggctacgattttattggtaaaaagaggaaggaaatt |
44380385 |
T |
|
| Q |
430 |
gtttctgatgatgattctcgggaggaagatgatg |
463 |
Q |
| |
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| ||| |||||||||| | ||||||||||||||| |
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| T |
44380384 |
gattcagatgatgattatggggaggaagatgatg |
44380351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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