View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_18 (Length: 480)
Name: NF11201_low_18
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 45595600 - 45596061
Alignment:
| Q |
1 |
tcaccaagaaacaacaataaagtcttgtaatttctaaccttgctcattaaaaagggatagcgtgatcgcaattcagtcatatgggattcacccccatata |
100 |
Q |
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| T |
45595600 |
tcaccaagaaacaacaataaagtcttgtaatttctaaccttgctcattaaaaagggatagcgtgatcgcaattcagtcatatgggattcacccccatata |
45595699 |
T |
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| Q |
101 |
tctcccctgcagcaatatatattggagtctttgcagggtatccaagagcactaaggaaaattccaacttcctttggagttaagggacaataccctttggc |
200 |
Q |
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| T |
45595700 |
tctcccctgcagcaatatatattggagtctttgcagggtatccaagagcactaaggaaaattccaacttcctttggagttaagggacaataccctttggc |
45595799 |
T |
|
| Q |
201 |
cctctcttcttttggattgatgtgctttcttttccaataagtagtattctctctgtaagtttggttcatgttagtcatttcaaacatcaggaagaaaaat |
300 |
Q |
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| T |
45595800 |
cctctcttcttttggatcgatgtgctttcttttccaataagtagtattctctctgtaagtttggttcatgttagtcatttcaaacatcaggaagaaaaat |
45595899 |
T |
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| Q |
301 |
taaactgaaaatttgacagaattttgaagcatcattacctgataatccgtagttccttggcctcagaagttgataaatcatgcgtgcagccgctgaatgc |
400 |
Q |
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| T |
45595900 |
taaactgaaaatttgacagaattttgaagcatcattacctgataatccgtagttccttggcctcagaagttgataaatcatgcgtgcagccgctgaatgc |
45595999 |
T |
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| Q |
401 |
aagcatatccttctcatagcgcaagtgtaatgtgatataaggaccatatgatctcatcctct |
462 |
Q |
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| T |
45596000 |
aagcatatccttctcatagcgcaagtgtaatgtgatataaggaccatatgatctcatcctct |
45596061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 27151335 - 27151508
Alignment:
| Q |
37 |
accttgctcattaaaaagggatagcgtgatcgcaattcagtcatatgggattcacccccatatatctcccctgcagcaatatatattggagtctttgcag |
136 |
Q |
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|||||||||||||| || ||||| || ||||||| ||||| ||||||||| ||||||||||| ||||| || |||||||||||||| || ||||||| | |
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| T |
27151335 |
accttgctcattaacaatggataacgggatcgcagttcagccatatgggactcacccccataaatctctccagcagcaatatatatcggcgtctttgatg |
27151434 |
T |
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| Q |
137 |
ggtatccaagagcactaaggaaaattccaacttcctttggagttaagggacaataccctttggccctctcttct |
210 |
Q |
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| T |
27151435 |
gatatccaagagcagtaagaaaaattccaacttcctttggtgttaaggggcaaaaccctttggacctctgttct |
27151508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 27151677 - 27151723
Alignment:
| Q |
372 |
gataaatcatgcgtgcagccgctgaatgcaagcatatccttctcata |
418 |
Q |
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| T |
27151677 |
gataaatcatgcgtacacccactaaatgcaagcatatccttctcata |
27151723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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