View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11201_low_21 (Length: 424)

Name: NF11201_low_21
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11201_low_21
NF11201_low_21
[»] chr3 (14 HSPs)
chr3 (26-424)||(749750-750162)
chr3 (26-347)||(675154-675485)
chr3 (340-424)||(678900-678984)
chr3 (202-345)||(2485112-2485259)
chr3 (26-232)||(2634006-2634215)
chr3 (317-378)||(1429705-1429766)
chr3 (171-255)||(2495517-2495597)
chr3 (318-360)||(7332267-7332309)
chr3 (26-107)||(7331921-7332004)
chr3 (188-262)||(2641879-2641951)
chr3 (188-262)||(2649372-2649444)
chr3 (108-149)||(7332018-7332059)
chr3 (219-260)||(7332157-7332198)
chr3 (318-366)||(2642017-2642065)
[»] scaffold0019 (2 HSPs)
scaffold0019 (171-405)||(2032-2270)
scaffold0019 (108-175)||(2296-2360)


Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 26 - 424
Target Start/End: Original strand, 749750 - 750162
Alignment:
Q  26 aaaattaaaatattgagacaatataatgcaacacatgtggaaacaaaattcactacaatctcaggcactatatcaatcatatcca-------------at 112  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||    
T  749750 aaaattaaaatattgagacaatataaggcaacacatgtggaaacaaaattcactacaatctcaggcactatatcaatcatatccacgtcatttcaccaat 749849  T
Q  113 gttatgaattgtacaatgtgttacgtgtgtgtaagaagaattcaataatatcattttcacaactttaaaaccctcgcaaataaaataccaaaatattcaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  749850 gttatgaattgtacaatgtgttacgtgtgtgtaagaagaattcaataatatcattttcacaactttaaaaccctcgcaaataaaataccaaaatattcaa 749949  T
Q  213 aactttcattttcacattaatcattcaacaagaataatcagttatcttgtagaccgttacccactatcacaaacaaaagctaaaacataaaaactttaat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  749950 aactttcattttcacattaatcattcaacaagaataatcagttatcttgtagaccgttacccactatcacaaacaaaagctaaaacataaaaactttaat 750049  T
Q  313 gtttattgtcaatttgaatttgtgcatactatcaaggttatc-aaaatctcgattcaaatcgtaagatcgtgtgatcttaattgtcccacacaagaaatc 411  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  750050 ggttattgtcaatttgaatttgtgcatactatcaaggttatcaaaaatctcgattcaaatcgtaagatcgtgtgatcttaattgtcccacacaagaaatc 750149  T
Q  412 ctgtacaagatca 424  Q
    |||||||||||||    
T  750150 ctgtacaagatca 750162  T

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Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 26 - 347
Target Start/End: Original strand, 675154 - 675485
Alignment:
Q  26 aaaattaaaatattgagacaatataatgcaacacatgtggaaacaaaattcactacaatctcaggcactatatcaatcatatcca-------------at 112  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||    
T  675154 aaaattaaaatattgagacaatataaggcaacacatgtggaaacaaaattcactacaatctcaggcactatatcaatcatatccacgtcatttcaccaat 675253  T
Q  113 gttatgaattgtacaatgtgttacgtgtgtgtaagaagaattcaataatatcattttcacaactttaaaaccctcgcaaataaaataccaaaatattcaa 212  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  675254 gttatgaattgtacaatgtgttacgtgtgtgtaaga---attcaataatatcattttcacaactttaaaaccctcgcaaataaaataccaaaatattcaa 675350  T
Q  213 aactttcattttcacattaatcattcaacaagaataatcagttatcttgtagaccgttacccactatcacaaacaaaagctaaaacataaaaactttaat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  675351 aactttcattttcacattaatcattcaacaagaataatcagttatcttgtagactgttacccactatcacaaacaaaagctaaaacataaaaactttaat 675450  T
Q  313 gtttattgtcaatttgaatttgtgcatactatcaa 347  Q
    |||||||||||||||||||||||||||||||||||    
T  675451 gtttattgtcaatttgaatttgtgcatactatcaa 675485  T

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Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 678900 - 678984
Alignment:
Q  340 actatcaaggttatcaaaatctcgattcaaatcgtaagatcgtgtgatcttaattgtcccacacaagaaatcctgtacaagatca 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  678900 actatcaaggttatcaaaatctcgattcaaatcgtaagatcgtgtgatcttaattgtcccacacaagaaatcctgtacaagatca 678984  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 345
Target Start/End: Complemental strand, 2485259 - 2485112
Alignment:
Q  202 aaaatattcaaaactttcattttcacattaatcattcaacaagaataatcagttatcttgtagaccgttacccactatcacaaacaaa-agctaaaacat 300  Q
    ||||||| |||||||||||||||  |||||| ||||||||||||||||||||||||||||||  || |||  |||||||| ||  ||| || |||||||     
T  2485259 aaaatatacaaaactttcatttttgcattaaacattcaacaagaataatcagttatcttgtaatccattaaacactatcaaaaggaaagagataaaacaa 2485160  T
Q  301 aaaaacttta---atgtttattgtcaatttgaatttgtgcatactatc 345  Q
    ||||||| ||   | | |||||||||||||||||||||| ||||||||    
T  2485159 aaaaactgtagccaaggttattgtcaatttgaatttgtgaatactatc 2485112  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 2634215 - 2634006
Alignment:
Q  26 aaaattaaaatattgagacaatataatgcaacacatgtggaaacaaaattcactacaatctcaggcactatatcaatcatat-------------ccaat 112  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||  || |||| |||||||||||  | ||||||||| ||||             |||||    
T  2634215 aaaattaaaatattgagacattataaggcaacacatatggaaatgaacttcaatacaatctcagaaattatatcaattatattcaggtcatttcaccaat 2634116  T
Q  113 gttatgaattgtacaatgtgttacgtgtgtgtaagaagaattcaataatatcattttcacaactttaaaaccctcgcaaataaaataccaaaatattcaa 212  Q
    ||||||||||||||||||||| |||||  |||   |||||||||||||||||||||   |      ||| |||  |||||||||||||| |||||| |||    
T  2634115 gttatgaattgtacaatgtgtgacgtgcatgt---aagaattcaataatatcatttaagc------aaaccccctgcaaataaaatacc-aaatatacaa 2634026  T
Q  213 aactttcattttcacattaa 232  Q
    ||||||||||||||||||||    
T  2634025 aactttcattttcacattaa 2634006  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 1429705 - 1429766
Alignment:
Q  317 attgtcaatttgaatttgtgcatactatcaaggttatcaaaatctcgattcaaatcgtaaga 378  Q
    |||||||||||||||||||||||  |||||||||| |||||||| ||||| |||||||||||    
T  1429705 attgtcaatttgaatttgtgcatgatatcaaggttttcaaaatcacgatttaaatcgtaaga 1429766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 2495597 - 2495517
Alignment:
Q  171 acaactttaaaaccctcgcaaataaaataccaaaatattcaaaactttcattttcacattaatcattcaacaagaataatcagtt 255  Q
    ||||||||||||| || ||||||||||  | ||||||| |||||||||| |||||||||||||||||   |||||||||||||||    
T  2495597 acaactttaaaacact-gcaaataaaagtctaaaatatacaaaactttcgttttcacattaatcatt---caagaataatcagtt 2495517  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 7332267 - 7332309
Alignment:
Q  318 ttgtcaatttgaatttgtgcatactatcaaggttatcaaaatc 360  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  7332267 ttgtcaatttgaattagtgcatactatcaaggttaccaaaatc 7332309  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 7331921 - 7332004
Alignment:
Q  26 aaaattaaaatattgagacaatataatgcaacaca--tgtggaaacaaaattcactacaatctcaggcactatatcaatcatat 107  Q
    ||||||| ||||||||||||  ||||  |||||||  | ||||||  || |||||||||||||||| |||||||||||||||||    
T  7331921 aaaattataatattgagacatcataagacaacacacatatggaaaggaacttcactacaatctcagacactatatcaatcatat 7332004  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 2641879 - 2641951
Alignment:
Q  188 gcaaataaaataccaaaatattcaaaactttcattttcacattaatcattcaacaagaataatcagttatcttgt 262  Q
    |||||| ||| ||||||||||  ||||  |||||||||| ||||||||||||||||||| || | ||||||||||    
T  2641879 gcaaatgaaacaccaaaatataaaaaa--ttcattttcagattaatcattcaacaagaagaaaccgttatcttgt 2641951  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 2649372 - 2649444
Alignment:
Q  188 gcaaataaaataccaaaatattcaaaactttcattttcacattaatcattcaacaagaataatcagttatcttgt 262  Q
    |||||| ||| ||||||||||  ||||  |||||||||| ||||||||||||||||||| || | ||||||||||    
T  2649372 gcaaatgaaacaccaaaatataaaaaa--ttcattttcagattaatcattcaacaagaagaaaccgttatcttgt 2649444  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 7332018 - 7332059
Alignment:
Q  108 ccaatgttatgaattgtacaatgtgttacgtgtgtgtaagaa 149  Q
    |||| ||||||||| |||||||||||| ||||||||||||||    
T  7332018 ccaaagttatgaatcgtacaatgtgttgcgtgtgtgtaagaa 7332059  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 7332157 - 7332198
Alignment:
Q  219 cattttcacattaatcattcaacaagaataatcagttatctt 260  Q
    |||||||| |||||||||| ||||||||||| ||||||||||    
T  7332157 cattttcagattaatcatttaacaagaataaacagttatctt 7332198  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 2642017 - 2642065
Alignment:
Q  318 ttgtcaatttgaatttgtgcatactatcaaggttatcaaaatctcgatt 366  Q
    ||||||||||||||  |||||||| ||||| |||||||||||| |||||    
T  2642017 ttgtcaatttgaatcagtgcatacaatcaatgttatcaaaatcacgatt 2642065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 171 - 405
Target Start/End: Complemental strand, 2270 - 2032
Alignment:
Q  171 acaactttaaaaccctcgcaaataaaataccaaaatattcaaaactttcattttcacattaatcattcaacaagaataatcagttatcttgtagaccgtt 270  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  || ||    
T  2270 acaactttaaaacccttgcaaataaaagaccaaaatatacaaaactttcattttgacattaatcattcaacaagaataatcagttatcttgtaatccatt 2171  T
Q  271 acccactatc-acaaacaaaagctaaaacat-aaaaacttta--atgtttattgtcaatttgaatttgtgcatactatcaaggttatcaaaatctcgatt 366  Q
    |  ||||||| | || ||| ||||||||||| ||||||  ||  ||| | ||||| || |||||| |||||||||||||| |||||||||| || |||||    
T  2170 aaacactatcaagaagcaagagctaaaacataaaaaaccataagatgatcattgttaacttgaatctgtgcatactatcagggttatcaaagtcacgatt 2071  T
Q  367 caaatcgtaagatcgtgtgatcttaattgtcccacacaa 405  Q
     |||| |||||||| || ||||||||| ||||| |||||    
T  2070 taaattgtaagatcatgcgatcttaatggtcccccacaa 2032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 2360 - 2296
Alignment:
Q  108 ccaatgttatgaattgtacaatgtgttacgtgtgtgtaagaagaattcaataatatcattttcacaac 175  Q
    |||||||||||||||||||| |||||| | ||||||||   |||||||||||||||||||| ||||||    
T  2360 ccaatgttatgaattgtacactgtgttgcatgtgtgta---agaattcaataatatcatttacacaac 2296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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