View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_22 (Length: 413)
Name: NF11201_low_22
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 394
Target Start/End: Complemental strand, 44379184 - 44378799
Alignment:
| Q |
10 |
cctgtgtgtagaccttgctatgagtatgaaagacaagaagggaaccaagcttgtcctcactgcaaaactaaatacaaacgcataaagggtaagccttcaa |
109 |
Q |
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| T |
44379184 |
cctgtgtgtagaccttgctatgagtatgaaagacgagaagggaaccaagcttgtcctcactgcaaaactaaatacaaacgcataaagggtaagccttcaa |
44379085 |
T |
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| Q |
110 |
ccgacnnnnnnnn-ctttactttgttatatataagtggaagaaaaagttttggctaacaaagcagagccaatatttgggtatggcactctgcagttggag |
208 |
Q |
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| T |
44379084 |
ccgactttttttttctttactttgttatatataagtggaagaaaaagttttggctaacaaagcagagccaatatttgggtatggcactctgcagttggag |
44378985 |
T |
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| Q |
209 |
acgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgtatttttcatatctgtttgcttttgaatgagggttgcttttctaac |
308 |
Q |
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| T |
44378984 |
acgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgtatttttcatatctgtttgcttttgaatgagggttgcttttctaac |
44378885 |
T |
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| Q |
309 |
aatcaggtagtccaagagttgagggtgacgaagaagaggatgggattgatgatttggaaaatgagtttgatattggaagcaatatc |
394 |
Q |
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| T |
44378884 |
aatcaggtagtccaagagttgagggtgacgaagaagaggatgggattgatgatttggaaaatgagtttgatattggaagcaatatc |
44378799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 12478604 - 12478510
Alignment:
| Q |
195 |
ctctgcagttggagacgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgtatttttcatatctgtttgcttttgaa |
289 |
Q |
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| T |
12478604 |
ctctgcagtaggagacgtaggcacaattggccaaacaccgtgatcaaatatcgtgtcttcttcgtttgtgtgttttgtatctgttttcttttgaa |
12478510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 3917847 - 3917806
Alignment:
| Q |
249 |
gtgttatttgtttgtatttttcatatctgtttgcttttgaat |
290 |
Q |
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| T |
3917847 |
gtgttatttgtttgtgcttttcatatctgtttacttttgaat |
3917806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 29363125 - 29363244
Alignment:
| Q |
193 |
cactctgcagttggagacgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgt-atttttcatatctgtttgcttttgaatg |
291 |
Q |
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| T |
29363125 |
cactctgcagtcagagacgtaggtacatttggccgaacactatgatcaaatctcgtgttttatctgtttgtgttttttcgtatccgtttacttttgaacc |
29363224 |
T |
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| Q |
292 |
agggttgcttttctaacaat |
311 |
Q |
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| T |
29363225 |
agggttgttgttctaacaat |
29363244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 6522140 - 6522066
Alignment:
| Q |
195 |
ctctgcagttggagacgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgtattttt |
269 |
Q |
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||||||||| |||||||||||||| ||||| |||| || |||||||||| || ||||| ||||| || |||||| |
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| T |
6522140 |
ctctgcagtctgagacgtaggcacaattggctgaaccccatgatcaaatctcgagtgttctttgtctgcattttt |
6522066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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