View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_23 (Length: 412)
Name: NF11201_low_23
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 39981880 - 39982274
Alignment:
| Q |
1 |
ataaaaaatgtatggtacttttaatttaacactaaataatctaaatatgagttgcacagtatgcactgaactttatttttggtgatttttcaacagtnnn |
100 |
Q |
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| T |
39981880 |
ataaaaaatgtatggtacttttaatttaacactaaataatctaaatatgagttgcacagtatgcactgaactttatttttggtgatttttcaacagtaaa |
39981979 |
T |
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| Q |
101 |
nnnnttagtaaagtagtttttaatcagccaatttttgcctgagtgattttgtgttatttgatcatattttatgtaattctgcttcagattatatgcctga |
200 |
Q |
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| T |
39981980 |
aaaattagtaaagtagtttttaatcagccaatttttgcctgagtgattttgtgttatttgatcatattttatgtaattctgcttcagattatatgcctga |
39982079 |
T |
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| Q |
201 |
gtgccactgccaacaaactgtcaaatatccagaaacaagcagaggaatatgcggctttgatcatggaagaactagacccggatgacacaggatatatctt |
300 |
Q |
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| T |
39982080 |
gtgccactgccaacaaactgtcaaatatccagaaacaagcagaggaatatgcggctttgatcatggaagaactagacccggatgacacaggatatatctt |
39982179 |
T |
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| Q |
301 |
ggtaattaaatgacagtatctaaactgtagtctccagattaaaataactatttcaatattatagaattgtgaccttactcatttgaccatatttt |
395 |
Q |
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| T |
39982180 |
ggtaattaaatgacagtatctaaattgtagtctccagattaaaataactatttcaatattatagaattgtgaccttactcatttgaccatatttt |
39982274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 183 - 308
Target Start/End: Original strand, 44913683 - 44913808
Alignment:
| Q |
183 |
ttcagattatatgcctgagtgccactgccaacaaactgtcaaatatccagaaacaagcagaggaatatgcggctttgatcatggaagaactagacccgga |
282 |
Q |
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|||||||||| ||||| ||||||||| | |||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||||||||||||| || |
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| T |
44913683 |
ttcagattatttgccttagtgccactacaaacaaactctcaaacatacagaagcaggcagaggaatatgctgctttgatcatggaagaactagaccctga |
44913782 |
T |
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| Q |
283 |
tgacacaggatatatcttggtaatta |
308 |
Q |
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||| || |||| |||| ||||||||| |
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| T |
44913783 |
tgatactggatttatcatggtaatta |
44913808 |
T |
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