View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_24 (Length: 406)
Name: NF11201_low_24
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 275 - 382
Target Start/End: Original strand, 18067184 - 18067291
Alignment:
| Q |
275 |
ttcttctttctatatattagaatttaaaattcaacatatattgattcaattgattagaaatttattcatacaacataatgacgtagttcacctcttttgc |
374 |
Q |
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| T |
18067184 |
ttcttctttctatatattagaatttaaaattcaacatatgttgattcaattgattaaaaatttattcatacaacataatgacgtagttcacctctcttgc |
18067283 |
T |
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| Q |
375 |
tttgtatt |
382 |
Q |
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|||||||| |
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| T |
18067284 |
tttgtatt |
18067291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 18067001 - 18067067
Alignment:
| Q |
58 |
aacaaagattaaattaagttgtgagaaattaattgaaaaaggagcacatgctagcgaccacataatt |
124 |
Q |
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| T |
18067001 |
aacaaagattaaattaagttgtgagaaattaattgaaaaaggagcacatgctagcgaccacataatt |
18067067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 18130276 - 18130342
Alignment:
| Q |
58 |
aacaaagattaaattaagttgtgagaaattaattgaaaaaggagcacatgctagcgaccacataatt |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18130276 |
aacaaagattaaattaagttgtgagaaattaattgaaaaaggagcacatgctagcgaccacataatt |
18130342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 291 - 369
Target Start/End: Original strand, 18068442 - 18068520
Alignment:
| Q |
291 |
ttagaatttaaaattcaacatatattgattcaattgattagaaatttattcatacaacataatgacgtagttcacctct |
369 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |
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| T |
18068442 |
ttagaatttataagtcaacatatattgattcaattgattagaaatttattcatacaatataatgatgtagttcaactct |
18068520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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