View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11201_low_26 (Length: 326)

Name: NF11201_low_26
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11201_low_26
NF11201_low_26
[»] chr2 (4 HSPs)
chr2 (246-318)||(10973705-10973777)
chr2 (246-307)||(2973587-2973648)
chr2 (246-319)||(14230934-14231007)
chr2 (246-300)||(17826658-17826712)
[»] chr1 (6 HSPs)
chr1 (59-148)||(47063063-47063148)
chr1 (24-89)||(47026785-47026850)
chr1 (42-94)||(47030738-47030790)
chr1 (59-103)||(47061535-47061579)
chr1 (246-318)||(47726169-47726241)
chr1 (246-318)||(47747475-47747547)
[»] chr4 (6 HSPs)
chr4 (257-319)||(27066502-27066564)
chr4 (246-313)||(54027864-54027931)
chr4 (246-312)||(12355135-12355201)
chr4 (257-319)||(27066696-27066758)
chr4 (257-319)||(27066890-27066952)
chr4 (257-319)||(27087603-27087665)
[»] chr6 (1 HSPs)
chr6 (246-319)||(30141094-30141167)
[»] chr8 (1 HSPs)
chr8 (263-318)||(10601022-10601077)
[»] chr5 (1 HSPs)
chr5 (257-313)||(5335371-5335427)
[»] scaffold1964 (1 HSPs)
scaffold1964 (246-318)||(1023-1095)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 10973777 - 10973705
Alignment:
Q  246 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10973777 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacggcttcccggtctttgct 10973705  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 2973648 - 2973587
Alignment:
Q  246 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcc 307  Q
    |||||||||| || ||||||| |||||||||||| |||||||| |||||||||||| |||||    
T  2973648 aagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcc 2973587  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 14230934 - 14231007
Alignment:
Q  246 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 319  Q
    |||||| ||| |||||||||| |||||||||||| |||||||| |||||||||||  | ||||||||| |||||    
T  14230934 aagatggtctttattcgggtcgggaagacataaccgaatttggaaacatcatcacagcctcccggtctttgctt 14231007  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 17826658 - 17826712
Alignment:
Q  246 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcac 300  Q
    |||||||||| |||||| ||| |||||| ||||| ||||||||||||||||||||    
T  17826658 aagatgctctttattcgtgtcgggaagatataaccgaatttggtaacatcatcac 17826712  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 47063063 - 47063148
Alignment:
Q  59 atgtatgtaatgtttctttgcagcgatgtggaactagaaggcgttgtttctactatatatctactatccactcccaccccaaacttggca 148  Q
    ||||||| ||||||||||||||||||||||| ||||  ||||||| |||||||    |||||||| ||||||| |||||| |||||||||    
T  47063063 atgtatgaaatgtttctttgcagcgatgtgggactaccaggcgttatttctac----tatctactctccactctcacccccaacttggca 47063148  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 47026785 - 47026850
Alignment:
Q  24 tgactttgtcaaaggcacttatataagatatcttcatgtatgtaatgtttctttgcagcgatgtgg 89  Q
    ||||| ||||||||||| |||||||| | || | |||||||| ||||||| |||||||||||||||    
T  47026785 tgactctgtcaaaggcaattatataaaacatgtccatgtatgcaatgtttgtttgcagcgatgtgg 47026850  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 47030738 - 47030790
Alignment:
Q  42 ttatataagatatcttcatgtatgtaatgtttctttgcagcgatgtggaacta 94  Q
    |||||||||||||||||| ||||  |||||| ||||| |||||||||| ||||    
T  47030738 ttatataagatatcttcaagtatagaatgttactttggagcgatgtgggacta 47030790  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 47061535 - 47061579
Alignment:
Q  59 atgtatgtaatgtttctttgcagcgatgtggaactagaaggcgtt 103  Q
    ||||||| |||||||||||| |||||||||| |||| ||||||||    
T  47061535 atgtatgcaatgtttctttgaagcgatgtgggactaaaaggcgtt 47061579  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 47726169 - 47726241
Alignment:
Q  246 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 318  Q
    |||| ||||| || ||| ||| |||||||||||| |||||||| |||||||||||   |||||||||| ||||    
T  47726169 aagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacatattcccggtctttgct 47726241  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 47747475 - 47747547
Alignment:
Q  246 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 318  Q
    |||| ||||| || ||| ||| |||||||||||| |||||||| |||||||||||   |||||||||| ||||    
T  47747475 aagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacatattcccggtctttgct 47747547  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 27066564 - 27066502
Alignment:
Q  257 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 319  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||||||||||| |||||    
T  27066564 tattcgggtcgggaagacataatggaatttggaaacatcatcacaacttcccggtctttgctt 27066502  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 54027931 - 54027864
Alignment:
Q  246 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 313  Q
    |||| ||||| | |||| ||| |||||| ||||| |||||||||||||||||||| ||||||||||||    
T  54027931 aagacgctctttgttcgagtcgggaagatataaccgaatttggtaacatcatcacaacttcccggtct 54027864  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 12355135 - 12355201
Alignment:
Q  246 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtc 312  Q
    |||||| ||| |||||||||| |||||||||||| |||||||| || ||||||||  ||||||||||    
T  12355135 aagatggtctttattcgggtcgggaagacataacggaatttggaaatatcatcacagcttcccggtc 12355201  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 27066758 - 27066696
Alignment:
Q  257 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 319  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||||| |||||    
T  27066758 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgctt 27066696  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 27066952 - 27066890
Alignment:
Q  257 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 319  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||||| |||||    
T  27066952 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgctt 27066890  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 27087665 - 27087603
Alignment:
Q  257 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 319  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||||| |||||    
T  27087665 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgctt 27087603  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 30141167 - 30141094
Alignment:
Q  246 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 319  Q
    |||||| ||| |||||||||| |||||||||||| |||| ||| |||||||||||  ||||||||||| |||||    
T  30141167 aagatggtctttattcgggtcgggaagacataacggaatgtggaaacatcatcacagcttcccggtctttgctt 30141094  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 10601022 - 10601077
Alignment:
Q  263 ggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 318  Q
    |||| |||||||||||| |||||||| |||||||||||||||| ||||||| ||||    
T  10601022 ggtcgggaagacataactgaatttggcaacatcatcacgactttccggtctttgct 10601077  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 5335427 - 5335371
Alignment:
Q  257 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 313  Q
    |||||||||| |||||||||||| |||||||| |||||||||||  |||||| ||||    
T  5335427 tattcgggtcgggaagacataactgaatttggaaacatcatcacagcttcccagtct 5335371  T

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Target: scaffold1964 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 1023 - 1095
Alignment:
Q  246 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 318  Q
    |||| ||||| || ||||||| |||||||||||| |||||||| ||||| |||||| ||| || |||| ||||    
T  1023 aagacgctctttactcgggtcgggaagacataactgaatttggcaacattatcacggctttccagtctttgct 1095  T

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