View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_27 (Length: 319)
Name: NF11201_low_27
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 164 - 319
Target Start/End: Complemental strand, 22325469 - 22325314
Alignment:
| Q |
164 |
ctgtaagtacacatatttatattgtttcaactgatggagacataacataactta-ttacatactgagttgttatttactattttcgttttaaaattttga |
262 |
Q |
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| T |
22325469 |
ctgtaagtacacatatttatattgtttcaactgatggagacataacataacttagttacatactgagttgttatttactattttcgttt-aaaattttga |
22325371 |
T |
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| Q |
263 |
atgaagaatggagaatctttccgcgctaaaggatttaagcgatataaattttcatcc |
319 |
Q |
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| T |
22325370 |
atgaagaatggagaatctttccgcgctaatggatttaagcgatataaattatcatcc |
22325314 |
T |
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Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 22326057 - 22325916
Alignment:
| Q |
16 |
ctaatatctcattgtatcccaattataaaattgtgggtggtttaaatccccccattgcatcttttcaaattagggttttgtacaatatcggaaaacaaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22326057 |
ctaatatctcattgtatcccaattataaaattgtgggtggtttaaatccccccattgcatcttttcaaattagggttttggacaatatcggaaaacaaag |
22325958 |
T |
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| Q |
116 |
tcaaattctagccatgtcaggtgatttaattaattataaata |
157 |
Q |
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| T |
22325957 |
tcgaattctagccatgtcaggtgattaaattaattataaata |
22325916 |
T |
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