View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11201_low_28 (Length: 312)
Name: NF11201_low_28
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_28 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 1669901 - 1669614
Alignment:
| Q |
12 |
gcagagaaacatgctatgatataaaaaagaaatagaatgcaaattcaaatcagaatcttcgaagactcaaaacactacaaaattctagtttttatacaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1669901 |
gcagagaaacatgctatgatataaaaaagaaatagaatgcaaattcaaatcagaatcttcgaagactcaaaacactacaaaattctagtttttatacaat |
1669802 |
T |
|
| Q |
112 |
ggtacccgtggaaatggatagtttaatgttgttcttgtatcaaaattcaaaagtgacaaaactcaagtttttaacaccctgaaacctcatc--gtgtttg |
209 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1669801 |
ggtactcttggaaatggatagtttaatgttgttcttgtatcaaaattcaaaagtgacaaaactcaagtttttaacaccctgaaacctcatcctgtgtttg |
1669702 |
T |
|
| Q |
210 |
tttaaaacacaagttcctgcattgaaaacagggtgtctgcatattgaatgaagtgagctttgaagttttttcacatggttgaaattat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1669701 |
tttaaaacacaagttcctgcattgaaaacagggtgtttgcatatttaatgaagtgagctttgaagttttttcacatggttgaaattat |
1669614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 89 - 265
Target Start/End: Complemental strand, 1665271 - 1665096
Alignment:
| Q |
89 |
caaaattctagtttttatacaatggtacccgtggaaatggatagtttaatgttgttcttgtatcaaaattcaaaagtgacaaaactcaagtttttaacac |
188 |
Q |
| |
|
||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1665271 |
caaaattctagttgttatgcaatggttcccgtggaaatggatagtttaatgtt---cttgtatccaaattcaaaagtgacaaaactcaagtttttaacac |
1665175 |
T |
|
| Q |
189 |
cctgaaacctcatc--gtgtttgtttaaaacacaagttcctgcattgaaaacagggtgtctgcatattgaatgaagtga |
265 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1665174 |
cctgaaacctcatcttgtgtttgtttgaaacataagctcctgccttgaaaacagggtgtctgcatattgaatgaagtga |
1665096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 7789 - 7537
Alignment:
| Q |
12 |
gcagagaaacatgctatgatataaaaaagaaatagaatgcaaattcaaatcagaatcttcgaagactcaaaacactacaaaattctagtttttatacaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
7789 |
gcagagaaacatgctatgatataaaaaagaaacagaatgcacattcaaatcagaatctttgaagactcaaaacactacaaaattctagttgttatgcaat |
7690 |
T |
|
| Q |
112 |
ggtacccgtggaaatggatagtttaatgttgttcttgtatcaaaattcaaaagtgacaaaactcaagtttttaacaccctgaaacctcatc--gtgtttg |
209 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7689 |
ggttcccgtggaaatggatagtttaa---tgttcttgtatccaaattcaaaagtgacaaaactcaagtttttaacaccctgaaacctcatcttgtgtttg |
7593 |
T |
|
| Q |
210 |
tttaaaacacaagttcctgcattgaaaacagggtgtctgcatattgaatgaagtga |
265 |
Q |
| |
|
||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7592 |
tttgaaacataagctcctgccttgaaaacagggtgtctgcatattgaatgaagtga |
7537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 5997413 - 5997645
Alignment:
| Q |
12 |
gcagagaaacatgctatgatataaaaaagaaatagaatgcaaattcaaatcagaatcttcgaagactcaaaacactacaaaattctagtttttatacaat |
111 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||| || || | |
|
|
| T |
5997413 |
gcagagaaacgtgctaggatataaaaaagaaacagaatgcacattcaaataagaatcttctaagactcaaaacactacaaaattctgattgtt-----ct |
5997507 |
T |
|
| Q |
112 |
ggtacccgtggaaatggatagtttaatgttgttcttgtatcaaaattcaaaagtgacaaaactcaagtttttaacaccctgaaacctcatc--gtgtttg |
209 |
Q |
| |
|
|| ||||||| |||||||||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||| ||||||| |
|
|
| T |
5997508 |
gg-----------atggataatttaatgttgttcttgta-------tcaaaagtgacaaaactcaagcttttgataccctgaaacctcatcttgtgtttg |
5997589 |
T |
|
| Q |
210 |
tttaaaacacaagttcctgcattgaaaacagggtgtctgcatattgaatgaagtga |
265 |
Q |
| |
|
||||| ||| |||||||||| ||||||||| ||||| |||| |||||| ||||||| |
|
|
| T |
5997590 |
tttaacacataagttcctgccttgaaaacatggtgtgtgcacattgaacgaagtga |
5997645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 5997669 - 5997702
Alignment:
| Q |
263 |
tgagctttgaagttttttcacatggttgaaatta |
296 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
5997669 |
tgagctttgaagttttttcacttggttgaaatta |
5997702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University