View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_29 (Length: 309)
Name: NF11201_low_29
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 291
Target Start/End: Complemental strand, 38003583 - 38003298
Alignment:
| Q |
6 |
agaagcagagaaattctttgcttgagacattgatctaacacggtttttaaggtgttgttgagcttgtcttaaaccatagttccatctgcaaataccagct |
105 |
Q |
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| T |
38003583 |
agaagaagagaaattctttgcttgagaaattgatctaacacggtttttaaggtgttgttgagcttgtcttaaagcataattccacctacaaataccagct |
38003484 |
T |
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| Q |
106 |
tggtctttcaaagcctccacaactccaacacttgcagccaccatccaggctttgcttgttgctgttgcacgattcatgatttttggatatcaaattaaga |
205 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38003483 |
tgatctttcaaagcttccacaactccaacacttgcagccaccatccatgctttgcttgttgctgttgcacgattcatgatttttggatatcaaattaaga |
38003384 |
T |
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| Q |
206 |
tgtagatagtgttgtttggtaaatatgaaagtgagtttgttgattgattgatgaagaaaaaaggagtgatggttggtcttatttat |
291 |
Q |
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| T |
38003383 |
tatagatagtgttgtttggtaaatatgaaagtgagtttgttgattgattgatgaagaaaaaaggagtgatggttggtcttatttat |
38003298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 38031834 - 38031589
Alignment:
| Q |
6 |
agaagcagagaaattctttgcttgagacattgatctaacacggtttttaaggtgttgttgagcttgtcttaaaccatagttccatctgcaaataccagct |
105 |
Q |
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| T |
38031834 |
agaagaagagaaattctttgcttgagaaattgatctaacacggtttttaaggtgttgttgagcttgtcttaaaccatagttccatctgcaaataccagct |
38031735 |
T |
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| Q |
106 |
tggtctttcaaagcctccacaactccaacacttgcagccaccatccaggctttgcttgttgctgttgcacgattcatgatttttggatatc-aaattaag |
204 |
Q |
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| T |
38031734 |
tggtctttcaaagcctccacaactccaacacttgcagccaccatccatgctttgcttgttgctgttgcacgattcatgatttttggatatcaaaatttag |
38031635 |
T |
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| Q |
205 |
atgtagatagtgttgtttggtaaatatgaaagtgagtttgttgatt |
250 |
Q |
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| ||||| |||||||||||||||||| |||| | || ||||||||| |
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| T |
38031634 |
aagtagacagtgttgtttggtaaataagaaaataagattgttgatt |
38031589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 38025094 - 38024909
Alignment:
| Q |
6 |
agaagcagagaaattctttgcttgagacattgatctaacacggtttttaaggtgttgttgagcttgtcttaaaccatagttccatctgcaaataccagct |
105 |
Q |
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||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| || || ||||||||| |
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| T |
38025094 |
agaagaagagaaattctttgcttgagacattgatttagcacggtttttaaggtgttgttgagcttgtcttaaagcatagttccacctacagataccagct |
38024995 |
T |
|
| Q |
106 |
tggtctttcaaagcctccacaactccaacacttgcagccaccatccaggctttgcttgttgctgttgcacgattcatgatttttgg |
191 |
Q |
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| T |
38024994 |
tgatctttcaaagcttccacaactccaacacttgcagccaccatccaggctttgcttgttgctgttgcacgattcatgatttttgg |
38024909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 38024870 - 38024824
Alignment:
| Q |
207 |
gtagatagtgttgtttggtaaatatgaaagtgagtttgttgattgat |
253 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
38024870 |
gtagatagtgttgtttggtaaatatgaaaatgagattgttgattgat |
38024824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 38033834 - 38033799
Alignment:
| Q |
104 |
cttggtctttcaaagcctccacaactccaacacttg |
139 |
Q |
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| T |
38033834 |
cttgatctttcaaagcctccacaactccaacacttg |
38033799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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