View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_3 (Length: 679)
Name: NF11201_low_3
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 389
Target Start/End: Complemental strand, 40724196 - 40723818
Alignment:
| Q |
11 |
cagagattatgtccaaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatga |
110 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40724196 |
cagagattatgtccaaactggctggagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaaaagaatgcaccatccatcatctttattgatga |
40724097 |
T |
|
| Q |
111 |
aattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40724096 |
aattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgt |
40723997 |
T |
|
| Q |
211 |
gctcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723996 |
gctcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttc |
40723897 |
T |
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| Q |
311 |
cagatgagattgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctctgatgatgtaagttgggcatt |
389 |
Q |
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| T |
40723896 |
cagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctctcatgatgtaagttggacatt |
40723818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 40665870 - 40666066
Alignment:
| Q |
11 |
cagagattatgtccaaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatcttta-ttgatg |
109 |
Q |
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| T |
40665870 |
cagagattatgtccaaactggctggagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaaaagaatgcaccatccatcatctttatttgatg |
40665969 |
T |
|
| Q |
110 |
aaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatc |
206 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
40665970 |
aaattgattctattgcacccaagcgggagaagacaaacggtgaagttgaaagaaggattgtctcacaacttctgactcttatggatgggctagaatc |
40666066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 484 - 660
Target Start/End: Original strand, 40666351 - 40666527
Alignment:
| Q |
484 |
atgatagttgcagtattaataagggttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaa |
583 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666351 |
atgatagctgcagtattaataaggtttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaa |
40666450 |
T |
|
| Q |
584 |
aatactcatgggtatgttggtgctgaccttgctgctctttgcactgaagctgctctccaacgcattagggagaagat |
660 |
Q |
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| T |
40666451 |
aatactcatgggtatgttggtgctgaccttgctgctctttgcactgaagctgctctacaatgcattagggagaagat |
40666527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 40666102 - 40666229
Alignment:
| Q |
262 |
gcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgagattgggcgacttgaagtccttcgcatacataccaaaaacatga |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666102 |
gcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatga |
40666201 |
T |
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| Q |
362 |
agctctctgatgatgtaagttgggcatt |
389 |
Q |
| |
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|||||||| |||||||||||||| |||| |
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| T |
40666202 |
agctctctcatgatgtaagttggacatt |
40666229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 509 - 660
Target Start/End: Complemental strand, 40723629 - 40723479
Alignment:
| Q |
509 |
ttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaaaatactcatgggtatgttggtgctg |
608 |
Q |
| |
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||||| ||||||||||||||||| | || ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40723629 |
ttttcgatttcctcaaattttcattcgcacatttacgacttt-ctctgtaggttgatttggagagaatttcaaaagatactcatgggtatgttggtgctg |
40723531 |
T |
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| Q |
609 |
accttgctgctctttgcactgaagctgctctccaacgcattagggagaagat |
660 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
40723530 |
accttgctgctctttgcactgaagctgctctacaatgcattagggagaagat |
40723479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 13 - 379
Target Start/End: Complemental strand, 41093021 - 41092655
Alignment:
| Q |
13 |
gagattatgtccaaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaa |
112 |
Q |
| |
|
||||| ||||| ||| | ||||| ||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| |||||||||||||||||||| | |
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| T |
41093021 |
gagataatgtcgaaacttgctggtgagagtgaaagcaatctaaggaaggcatttgaggaagctgagaagaatgcaccttccatcatctttattgatgaga |
41092922 |
T |
|
| Q |
113 |
ttgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgc |
212 |
Q |
| |
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| ||||| || || || ||||| || || || | ||||||||||| || |||||||| || ||||| |||| ||||||||||| || ||||| ||||| |
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| T |
41092921 |
tagattccatagctcctaagcgagagaaaactcacggtgaagtagagaggaggattgtctcccaactcttgacccttatggatggtcttaaatcacgtgc |
41092822 |
T |
|
| Q |
213 |
tcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttcca |
312 |
Q |
| |
|
||||| ||||| ||||| ||||| ||| | ||||||||||||||||| ||| | || |||||||| || ||||||||||| || ||||||||||||||| |
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| T |
41092821 |
acatgtaattgttatgggagccacaaataggcccaatagcattgaccctgcacttaggaggtttggaaggtttgatagggagattgatattggtgttcca |
41092722 |
T |
|
| Q |
313 |
gatgagattgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctctgatgatgtaa |
379 |
Q |
| |
|
|| ||| ||||||| ||||| || ||||| || ||||| || || ||||| ||| | || ||||||| |
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| T |
41092721 |
gacgaggttgggcgtcttgaggttcttcgaattcatacaaagaatatgaaactcgccgaagatgtaa |
41092655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 29 - 365
Target Start/End: Original strand, 27977299 - 27977635
Alignment:
| Q |
29 |
tggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctattgcacc |
128 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| ||||| |||||||| || ||||||||||| || |||||||| |||||||| || || || ||||| || |
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| T |
27977299 |
tggctggtgagagtgaaagtaatctgaggaaggcattcgaagaagctgagaagaatgcaccctcaatcatcttcattgatgagatagactccattgctcc |
27977398 |
T |
|
| Q |
129 |
caagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgctcatgttattgtcatg |
228 |
Q |
| |
|
||| |||| ||||| ||||||||||| || |||| |||||||| || || |||| || ||||||||||| ||||||||||| ||||| ||||| ||| |
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|
| T |
27977399 |
aaagagggagaagactaatggtgaagttgagcgaagaattgtttcccagctcttgaccctcatggatgggcttaaatcccgtgcacatgtaattgttatg |
27977498 |
T |
|
| Q |
229 |
ggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgagattgggcgac |
328 |
Q |
| |
|
|| || || ||||| ||||||||||| ||||| || | | |||||||| || |||||| |||| || ||||||||||| |||||||| |||| || | |
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|
| T |
27977499 |
ggagcaacaaatcgtcccaatagcatcgaccctgctcttcggaggtttggaaggtttgatcgggagattgatattggtgtaccagatgaagttggacgtc |
27977598 |
T |
|
| Q |
329 |
ttgaagtccttcgcatacataccaaaaacatgaagct |
365 |
Q |
| |
|
|||| || || ||||| ||||| ||||| |||||||| |
|
|
| T |
27977599 |
ttgaggttctccgcatccatacaaaaaatatgaagct |
27977635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 15690253 - 15690360
Alignment:
| Q |
86 |
caccatccatcatctttattgatgaaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgac |
185 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||||||| || |||||| | || |||||| || |||||| || |||||||||||||||||| | ||| |
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| T |
15690253 |
caccattcatcttctttattgatgaatttgattctactgtacccaa--gagagaagacacgtgatgaagttgatagaaggattgtttcacaagtcttgaa |
15690350 |
T |
|
| Q |
186 |
tcttatggat |
195 |
Q |
| |
|
|||||||||| |
|
|
| T |
15690351 |
tcttatggat |
15690360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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