View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_32 (Length: 282)
Name: NF11201_low_32
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 43016866 - 43017134
Alignment:
| Q |
1 |
tcagggctgcagcttgacacaccagtagaaaacccccaaacacagtcgtgagcttttgacatcgttttcattcgctggtggaagaaaagaaaacggaagg |
100 |
Q |
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| T |
43016866 |
tcagggctgcagcttgacacaccagtagaaaacccccaaacacagtcgtgagcttttgacaccgttttcattcgctggtggaagaaaagaaaacggaagg |
43016965 |
T |
|
| Q |
101 |
gaaaagagaaaggggtaggcaagaagatagtcatttgatgatcttgatgggatattacgtgatagtaacaagcatctatatatcaagcacgaacacagac |
200 |
Q |
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| T |
43016966 |
gaaaagagaaaggggtaggcaagaagatagtcatttgatgatcttgatgggatattacgtgatagtaacaagcatctatatatcaagcacgaacacagac |
43017065 |
T |
|
| Q |
201 |
aacggacacaacaaagacactaacatgttgaaacaattaattctacacctgcataatcgagttcatctc |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017066 |
aacggacacaacaaagacactaacatgttgaaacaattaattctacacctgcataatcgagttcatctc |
43017134 |
T |
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