View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_36 (Length: 260)
Name: NF11201_low_36
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 280391 - 280631
Alignment:
| Q |
1 |
aaacaggtacgtatggtttttgttttctgaattcttatcatcaaaatgcatctgattgaaacatattcaatatcacaattcaatactactatagtttatt |
100 |
Q |
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| T |
280391 |
aaacaggtacgtatggtttttgttttctgaattcttatcatcaaaatgcatctgattgaaacatattcaatatcacaattcaatactgctatagtttatt |
280490 |
T |
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| Q |
101 |
attataaagatgtttattttagatataattaagggatggatagatatatcatattctccctcttgctcttgtattgtattttatccataagttctttcta |
200 |
Q |
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| T |
280491 |
attataaagatgtttattttagatataattaagggatggatagatatatcatattctccctcttgctcttgtattatattttatccataagttctttcta |
280590 |
T |
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| Q |
201 |
gcttgtctgtggaacccacttgaaccttaggaattagaact |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
280591 |
gcttgtctgtggaacccacttgaaccttaggaattagaact |
280631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 635461 - 635221
Alignment:
| Q |
1 |
aaacaggtacgtatggtttttgttttctgaattcttatcatcaaaatgcatctgattgaaacatattcaatatcacaattcaatactactatagtttatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
635461 |
aaacaggtacgtatggtttttgttttctgaattcttatcatcaaaatgcatctgattgaaacatattcaatatcacaattcaatactgctatagtttatt |
635362 |
T |
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| Q |
101 |
attataaagatgtttattttagatataattaagggatggatagatatatcatattctccctcttgctcttgtattgtattttatccataagttctttcta |
200 |
Q |
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| T |
635361 |
attataaagatgtttattttagatataattaagggatggatagatatatcatattctccctcttgctcttgtattatattttatccataagttctttcta |
635262 |
T |
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| Q |
201 |
gcttgtctgtggaacccacttgaaccttaggaattagaact |
241 |
Q |
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| T |
635261 |
gcttgtctgtggaacccacttgaaccttaggaattagaact |
635221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 821264 - 821024
Alignment:
| Q |
1 |
aaacaggtacgtatggtttttgttttctgaattcttatcatcaaaatgcatctgattgaaacatattcaatatcacaattcaatactactatagtttatt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
821264 |
aaacaggtacgtatggtttttgttttctgaattcttatcatcaaaatgcatctgattgaaacatattcaatatcacaattcaatactgctatagtttatt |
821165 |
T |
|
| Q |
101 |
attataaagatgtttattttagatataattaagggatggatagatatatcatattctccctcttgctcttgtattgtattttatccataagttctttcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
821164 |
attataaagatgtttattttagatataattaagggatggatagatatatcatattctccctcttgctcttgtattatattttatccataagttctttcta |
821065 |
T |
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| Q |
201 |
gcttgtctgtggaacccacttgaaccttaggaattagaact |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
821064 |
gcttgtctgtggaacccacttgaaccttaggaattagaact |
821024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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