View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11201_low_44 (Length: 241)

Name: NF11201_low_44
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11201_low_44
NF11201_low_44
[»] chr2 (24 HSPs)
chr2 (18-63)||(23143587-23143632)
chr2 (18-63)||(23555377-23555422)
chr2 (18-62)||(23143481-23143525)
chr2 (18-62)||(23555271-23555315)
chr2 (20-58)||(27331862-27331900)
chr2 (20-57)||(38465789-38465826)
chr2 (20-58)||(3098229-3098267)
chr2 (20-58)||(21183430-21183468)
chr2 (20-58)||(25270959-25270997)
chr2 (20-58)||(31024170-31024208)
chr2 (21-55)||(32800709-32800743)
chr2 (32-61)||(2144084-2144113)
chr2 (28-57)||(3121422-3121451)
chr2 (20-57)||(3121525-3121562)
chr2 (20-57)||(3887936-3887973)
chr2 (20-57)||(5574213-5574250)
chr2 (21-58)||(7079369-7079406)
chr2 (20-57)||(15119880-15119917)
chr2 (20-52)||(1961412-1961444)
chr2 (20-52)||(25270861-25270893)
chr2 (18-62)||(27964279-27964323)
chr2 (32-64)||(28936122-28936154)
chr2 (18-62)||(30429064-30429108)
chr2 (18-62)||(41517359-41517403)
[»] chr6 (16 HSPs)
chr6 (18-62)||(3203772-3203816)
chr6 (18-62)||(3203666-3203710)
chr6 (20-62)||(16121068-16121110)
chr6 (18-56)||(31996600-31996638)
chr6 (20-57)||(31536311-31536348)
chr6 (18-62)||(2950867-2950911)
chr6 (21-55)||(12104747-12104781)
chr6 (23-56)||(6797369-6797402)
chr6 (18-55)||(16199122-16199159)
chr6 (20-57)||(17773604-17773641)
chr6 (20-57)||(21506463-21506500)
chr6 (20-57)||(26527190-26527227)
chr6 (20-61)||(26527293-26527334)
chr6 (20-53)||(31714539-31714572)
chr6 (20-53)||(34379838-34379871)
chr6 (20-52)||(16199226-16199258)
[»] chr5 (27 HSPs)
chr5 (21-62)||(7613353-7613394)
chr5 (18-57)||(14772548-14772587)
chr5 (18-57)||(25694216-25694255)
chr5 (18-56)||(22227082-22227120)
chr5 (20-57)||(10437740-10437777)
chr5 (18-62)||(32911593-32911638)
chr5 (18-62)||(8717808-8717852)
chr5 (18-62)||(13391632-13391676)
chr5 (18-57)||(25792947-25792986)
chr5 (18-65)||(34445253-34445300)
chr5 (18-56)||(14144328-14144366)
chr5 (20-58)||(18033458-18033496)
chr5 (20-58)||(35969127-35969165)
chr5 (20-62)||(40515284-40515326)
chr5 (33-66)||(5240217-5240250)
chr5 (20-57)||(11795736-11795773)
chr5 (20-57)||(15549428-15549465)
chr5 (20-57)||(23914841-23914878)
chr5 (23-64)||(40736172-40736213)
chr5 (30-66)||(71250-71286)
chr5 (21-57)||(71365-71401)
chr5 (18-62)||(7313931-7313975)
chr5 (18-46)||(8717729-8717757)
chr5 (18-58)||(13356105-13356145)
chr5 (21-57)||(13356241-13356277)
chr5 (18-62)||(14751226-14751270)
chr5 (22-58)||(28518717-28518753)
[»] chr8 (17 HSPs)
chr8 (18-57)||(28882765-28882804)
chr8 (23-57)||(31271638-31271672)
chr8 (20-57)||(10934706-10934743)
chr8 (18-62)||(17871758-17871802)
chr8 (21-57)||(24471184-24471220)
chr8 (20-55)||(11295666-11295701)
chr8 (18-56)||(17986295-17986333)
chr8 (18-64)||(24052929-24052975)
chr8 (20-57)||(14381238-14381275)
chr8 (18-51)||(17871864-17871897)
chr8 (20-57)||(40098760-40098797)
chr8 (20-57)||(40098863-40098900)
chr8 (21-57)||(13964419-13964455)
chr8 (18-58)||(15037749-15037789)
chr8 (20-64)||(24471280-24471324)
chr8 (18-50)||(29309844-29309876)
chr8 (31-67)||(37288661-37288697)
[»] chr4 (15 HSPs)
chr4 (22-65)||(6975038-6975081)
chr4 (20-56)||(484037-484073)
chr4 (20-62)||(2198043-2198085)
chr4 (20-62)||(22720609-22720651)
chr4 (21-55)||(30938905-30938939)
chr4 (20-57)||(19934638-19934675)
chr4 (21-58)||(29006939-29006976)
chr4 (28-57)||(36786261-36786290)
chr4 (27-56)||(44755465-44755494)
chr4 (21-58)||(47181558-47181595)
chr4 (20-57)||(52817670-52817707)
chr4 (20-57)||(54164813-54164850)
chr4 (20-57)||(54164916-54164953)
chr4 (18-62)||(10065061-10065105)
chr4 (20-52)||(38382079-38382111)
[»] chr1 (29 HSPs)
chr1 (20-58)||(24981944-24981982)
chr1 (18-62)||(9675961-9676005)
chr1 (18-62)||(29043449-29043493)
chr1 (20-52)||(50308633-50308665)
chr1 (18-57)||(14214550-14214589)
chr1 (18-57)||(52923424-52923463)
chr1 (20-62)||(5431336-5431378)
chr1 (28-66)||(29043572-29043610)
chr1 (20-57)||(639799-639836)
chr1 (20-57)||(1409152-1409189)
chr1 (20-57)||(4060274-4060311)
chr1 (18-59)||(6340671-6340712)
chr1 (20-57)||(8338675-8338712)
chr1 (20-57)||(17490488-17490525)
chr1 (20-57)||(18353572-18353609)
chr1 (20-57)||(19175691-19175728)
chr1 (20-57)||(27206862-27206899)
chr1 (20-57)||(28038930-28038967)
chr1 (20-57)||(31008259-31008296)
chr1 (20-57)||(33604094-33604131)
chr1 (18-63)||(34768379-34768424)
chr1 (20-57)||(37734876-37734913)
chr1 (20-57)||(45115273-45115310)
chr1 (20-57)||(48022595-48022632)
chr1 (21-57)||(3013714-3013750)
chr1 (20-56)||(5431443-5431479)
chr1 (20-60)||(15057654-15057694)
chr1 (18-62)||(27864520-27864564)
chr1 (18-62)||(38758401-38758445)
[»] chr7 (16 HSPs)
chr7 (20-57)||(25245246-25245283)
chr7 (18-62)||(2456331-2456375)
chr7 (20-64)||(8127930-8127974)
chr7 (18-62)||(34750323-34750367)
chr7 (20-58)||(25079206-25079244)
chr7 (20-58)||(31115712-31115750)
chr7 (20-53)||(2943216-2943249)
chr7 (20-57)||(10095719-10095756)
chr7 (18-63)||(34670347-34670392)
chr7 (20-57)||(38238887-38238924)
chr7 (18-62)||(3967700-3967744)
chr7 (18-54)||(3967806-3967842)
chr7 (28-56)||(29205313-29205341)
chr7 (21-57)||(43103072-43103108)
chr7 (20-52)||(46022553-46022585)
chr7 (21-65)||(47534962-47535006)
[»] chr3 (18 HSPs)
chr3 (21-58)||(331798-331835)
chr3 (20-57)||(52215983-52216020)
chr3 (20-58)||(21217165-21217203)
chr3 (20-58)||(24075446-24075484)
chr3 (20-50)||(39579596-39579626)
chr3 (20-57)||(331901-331938)
chr3 (20-57)||(7882281-7882318)
chr3 (20-57)||(8504850-8504887)
chr3 (20-57)||(27224580-27224617)
chr3 (20-57)||(29565109-29565146)
chr3 (21-62)||(37897786-37897827)
chr3 (33-62)||(50335036-50335065)
chr3 (20-53)||(54595794-54595827)
chr3 (20-52)||(21217269-21217301)
chr3 (18-62)||(26331317-26331361)
chr3 (21-57)||(36362604-36362640)
chr3 (21-57)||(40639813-40639849)
chr3 (20-52)||(44382915-44382947)
[»] scaffold0019 (1 HSPs)
scaffold0019 (20-62)||(42758-42800)


Alignment Details
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 23143587 - 23143632
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagtag 63  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  23143587 acctaaaaagttgatttttgcttataatagtgaccggagggagtag 23143632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 23555377 - 23555422
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagtag 63  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  23555377 acctaaaaagttgatttttgcttataatagtgaccggagggagtag 23555422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 23143525 - 23143481
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  23143525 acctaaaaagttgatttttgcttataatagtgaccgaagggagta 23143481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 23555315 - 23555271
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  23555315 acctaaaaagttgatttttgcttataatagtgaccgaagggagta 23555271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 27331862 - 27331900
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  27331862 ctaaaatgttgatttttgcttataatagtgaccggagga 27331900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 38465826 - 38465789
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| |||||||||||||||||||||||||||||||    
T  38465826 ctaaaatgttgatttttgcttataatagtgaccggagg 38465789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 3098229 - 3098267
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||||| || |||||||||||||||||||||||||||||    
T  3098229 ctaaaatgtagatttttgcttataatagtgaccggagga 3098267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 21183430 - 21183468
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  21183430 ctaaaatgttgatttttgcttataacagtgaccggagga 21183468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 25270959 - 25270997
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||||| || |||||||||||||||||||||||||||||    
T  25270959 ctaaaatgtagatttttgcttataatagtgaccggagga 25270997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 31024208 - 31024170
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  31024208 ctaaaatgttgatttttgcttataatagtgaccgtagga 31024170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 32800743 - 32800709
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccgga 55  Q
    ||||| |||||||||||||||||||||||||||||    
T  32800743 taaaaggttgatttttgcttataatagtgaccgga 32800709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 2144084 - 2144113
Alignment:
Q  32 tttttgcttataatagtgaccggaggaagt 61  Q
    ||||||||||||||||||||||||||||||    
T  2144084 tttttgcttataatagtgaccggaggaagt 2144113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 3121451 - 3121422
Alignment:
Q  28 ttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||||||||||||||||||||||||    
T  3121451 ttgatttttgcttataatagtgaccggagg 3121422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 3121525 - 3121562
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| || ||||||||||||||||||||||||||||    
T  3121525 ctaaaatgtagatttttgcttataatagtgaccggagg 3121562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 3887936 - 3887973
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  3887936 ctaaaaagatgatttttgcttatattagtgaccggagg 3887973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 5574213 - 5574250
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  5574213 ctaaaaagtagatttttgcttatattagtgaccggagg 5574250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 7079406 - 7079369
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggagga 58  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  7079406 taaaatgttgatttttgcttataatagtgatcggagga 7079369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 15119880 - 15119917
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| || ||||||||||||||||||||||||||||    
T  15119880 ctaaaatgtagatttttgcttataatagtgaccggagg 15119917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 1961412 - 1961444
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgacc 52  Q
    |||||| ||||||||||||||||||||||||||    
T  1961412 ctaaaatgttgatttttgcttataatagtgacc 1961444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 25270893 - 25270861
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgacc 52  Q
    |||||| ||||||||||||||||||||||||||    
T  25270893 ctaaaacgttgatttttgcttataatagtgacc 25270861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 27964323 - 27964279
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    |||||||||||  |||||||||||||| |||||||||||| ||||    
T  27964323 acctaaaaagtcaatttttgcttataaaagtgaccggagggagta 27964279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 28936122 - 28936154
Alignment:
Q  32 tttttgcttataatagtgaccggaggaagtagt 64  Q
    |||||||||| ||||||||||||||||||||||    
T  28936122 tttttgcttaaaatagtgaccggaggaagtagt 28936154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 30429108 - 30429064
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||||| |||||||||||||  ||||||||||| ||||    
T  30429108 acctaaaaagttgttttttgcttataaatgtgaccggagggagta 30429064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 41517403 - 41517359
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||||| |||||||||||||  ||||||||||| ||||    
T  41517403 acctaaaaagttggtttttgcttataaatgtgaccggagggagta 41517359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 3203772 - 3203816
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  3203772 acctaaaaagttgatttttgcttataatagtgactggaggaagta 3203816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 3203710 - 3203666
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||    
T  3203710 acctaaaaaattgatttttgcttataatagtgaccggagggagta 3203666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 16121068 - 16121110
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||||||||||||||||||||||| |||||| ||||    
T  16121068 ctaaaaagttgatttttgcttataatagtgatcggagggagta 16121110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 31996600 - 31996638
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggag 56  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  31996600 acctaaaatgttgatttttgcttataatagtgaccggag 31996638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 31536348 - 31536311
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||||||||||||||||||||| |||||||||||||    
T  31536348 ctaaaaagttgatttttgcttatattagtgaccggagg 31536311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 2950867 - 2950911
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    |||||||||||||||| |||||||||||| |||||||| ||||||    
T  2950867 acctaaaaagttgattattgcttataataatgaccggatgaagta 2950911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 12104781 - 12104747
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccgga 55  Q
    ||||| |||||||||||||||||||||||||||||    
T  12104781 taaaatgttgatttttgcttataatagtgaccgga 12104747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 6797402 - 6797369
Alignment:
Q  23 aaaagttgatttttgcttataatagtgaccggag 56  Q
    ||||||||| ||||||||||||||||||||||||    
T  6797402 aaaagttgacttttgcttataatagtgaccggag 6797369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 16199159 - 16199122
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccgga 55  Q
    |||||||| || ||||||||||||||||||||||||||    
T  16199159 acctaaaatgtagatttttgcttataatagtgaccgga 16199122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 17773604 - 17773641
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  17773604 ctaaaaagtagatttttgcttatattagtgaccggagg 17773641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 21506500 - 21506463
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  21506500 ctaaaaagtggatttttgcttatattagtgaccggagg 21506463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 26527227 - 26527190
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  26527227 ctaaaatgttgatttttgcttataatagtgatcggagg 26527190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 26527293 - 26527334
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggaggaagt 61  Q
    |||||| ||| |||||||||||||||||||| ||||||||||    
T  26527293 ctaaaatgttaatttttgcttataatagtgaacggaggaagt 26527334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 31714572 - 31714539
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccg 53  Q
    |||||| |||||||||||||||||||||||||||    
T  31714572 ctaaaatgttgatttttgcttataatagtgaccg 31714539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 34379838 - 34379871
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccg 53  Q
    |||||| |||||||||||||||||||||||||||    
T  34379838 ctaaaatgttgatttttgcttataatagtgaccg 34379871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 16199226 - 16199258
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgacc 52  Q
    |||||| ||||||||||||||||||||||||||    
T  16199226 ctaaaacgttgatttttgcttataatagtgacc 16199258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 7613394 - 7613353
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  7613394 taaaaagttgatttttgcttataatagtgaccggagaaagta 7613353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 14772587 - 14772548
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  14772587 acctaaaatgttgatttttgcttataatagtgaccggagg 14772548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 25694216 - 25694255
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  25694216 acctagaaagttgatttttgcttataatagtgaccggagg 25694255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 22227082 - 22227120
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggag 56  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  22227082 acctaaaacgttgatttttgcttataatagtgaccggag 22227120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 10437740 - 10437777
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| |||||||||||||||||||||||||||||||    
T  10437740 ctaaaatgttgatttttgcttataatagtgaccggagg 10437777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 32911593 - 32911638
Alignment:
Q  18 acctaaaaagttgatttt-tgcttataatagtgaccggaggaagta 62  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||    
T  32911593 acctaaaaagttgattttttgcttataatagtgaccagaggaagta 32911638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 8717808 - 8717852
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||| ||||||||||||||||||||||| |||||| ||||    
T  8717808 acctaaaaatttgatttttgcttataatagtgatcggagggagta 8717852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 13391632 - 13391676
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||||||||||||||||||| |||||| ||||| ||||    
T  13391632 acctaaaaagttgatttttgcttataacagtgacaggagggagta 13391676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 25792947 - 25792986
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  25792947 acctaaaaagtaaatttttgcttataatagtgaccggagg 25792986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 34445300 - 34445253
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagtagtt 65  Q
    ||||||||||||| ||||||||||||| ||||||| |||| |||||||    
T  34445300 acctaaaaagttgttttttgcttataaaagtgaccagagggagtagtt 34445253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 14144366 - 14144328
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggag 56  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  14144366 acctaaaaagtagatttatgcttataatagtgaccggag 14144328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 18033458 - 18033496
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||||| || |||||||||||||||||||||||||||||    
T  18033458 ctaaaatgtagatttttgcttataatagtgaccggagga 18033496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 35969165 - 35969127
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  35969165 ctaaaaagtggatttttgcttatattagtgaccggagga 35969127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 40515284 - 40515326
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    |||||||||  | ||||||||||||||||||||||||||||||    
T  40515284 ctaaaaagtgaacttttgcttataatagtgaccggaggaagta 40515326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 5240250 - 5240217
Alignment:
Q  33 ttttgcttataatagtgaccggaggaagtagttt 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  5240250 ttttgcttataatagtgaccggagggagtagttt 5240217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 11795773 - 11795736
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  11795773 ctaaaatgttgatttttgcttatattagtgaccggagg 11795736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 15549428 - 15549465
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  15549428 ctaaaatgttgatttttgtttataatagtgaccggagg 15549465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 23914878 - 23914841
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  23914878 ctaaaaagtggatttttgcttatattagtgaccggagg 23914841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 40736213 - 40736172
Alignment:
Q  23 aaaagttgatttttgcttataatagtgaccggaggaagtagt 64  Q
    |||||| |||||||||||||||||||||| ||||| ||||||    
T  40736213 aaaagtggatttttgcttataatagtgacaggagggagtagt 40736172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 71286 - 71250
Alignment:
Q  30 gatttttgcttataatagtgaccggaggaagtagttt 66  Q
    ||||||||||||||||||||||||||||  |||||||    
T  71286 gatttttgcttataatagtgaccggagggtgtagttt 71250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 71365 - 71401
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  71365 taaaatgttgatttttgcttataatagtgatcggagg 71401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 7313931 - 7313975
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    |||||||||||  | ||||||||||||||||||||||||| ||||    
T  7313931 acctaaaaagtcaacttttgcttataatagtgaccggagggagta 7313975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 8717757 - 8717729
Alignment:
Q  18 acctaaaaagttgatttttgcttataata 46  Q
    |||||||||||||||||||||||||||||    
T  8717757 acctaaaaagttgatttttgcttataata 8717729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 13356145 - 13356105
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||||||||||  | ||||||||||||||||||||||||||    
T  13356145 acctaaaaagtaaaattttgcttataatagtgaccggagga 13356105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 13356241 - 13356277
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  13356241 taaaaagtagatttttgcttataataatgaccggagg 13356277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 14751226 - 14751270
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||||| |||||||||||||  ||||||||||| ||||    
T  14751226 acctaaaaagttgttttttgcttataaatgtgaccggagggagta 14751270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 28518753 - 28518717
Alignment:
Q  22 aaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||| |||||||||||||||||||||||||| |||||    
T  28518753 aaaatgttgatttttgcttataatagtgaccagagga 28518717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 28882765 - 28882804
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  28882765 acctaaaaggttgatttttgcttataatagtgaccggagg 28882804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 31271638 - 31271672
Alignment:
Q  23 aaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||||||||||||||||||||||||||||||||    
T  31271638 aaaagttgatttttgcttataatagtgaccggagg 31271672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 10934706 - 10934743
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| |||||||||||||||||||||||||||||||    
T  10934706 ctaaaatgttgatttttgcttataatagtgaccggagg 10934743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 17871802 - 17871758
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||||    
T  17871802 acctaaaaagttgatttttgcttataataatgaccagagggagta 17871758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 24471220 - 24471184
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||| |||||||||||||||||||||||||||||||    
T  24471220 taaaatgttgatttttgcttataatagtgaccggagg 24471184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 11295701 - 11295666
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccgga 55  Q
    |||||| |||||||||||||||||||||||||||||    
T  11295701 ctaaaatgttgatttttgcttataatagtgaccgga 11295666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 17986295 - 17986333
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggag 56  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  17986295 acctaaaaagttgatttttacttataatagtgatcggag 17986333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 24052929 - 24052975
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagtagt 64  Q
    ||||||||||| |||||||| ||||||||||||||||| || |||||    
T  24052929 acctaaaaagtagatttttgtttataatagtgaccggatgatgtagt 24052975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 14381275 - 14381238
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  14381275 ctaaaaagtggatttttgcttatattagtgaccggagg 14381238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 17871864 - 17871897
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgac 51  Q
    ||||||||| ||||||||||||||||||||||||    
T  17871864 acctaaaaaattgatttttgcttataatagtgac 17871897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 40098797 - 40098760
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  40098797 ctaaaaagtagatttttgcttatattagtgaccggagg 40098760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 40098863 - 40098900
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  40098863 ctaaaaagtggatttttgcttatattagtgaccggagg 40098900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 13964455 - 13964419
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  13964455 taaaatgttgatttttgcttataatagtgaccagagg 13964419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 15037789 - 15037749
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    ||||||||||| |||||||| |||||||| |||||||||||    
T  15037789 acctaaaaagtagatttttgtttataatactgaccggagga 15037749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 24471280 - 24471324
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggaggaagtagt 64  Q
    |||||| ||| ||||||| |||||||||||||||||||| |||||    
T  24471280 ctaaaatgttaatttttgtttataatagtgaccggaggatgtagt 24471324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 29309844 - 29309876
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtga 50  Q
    |||||||||||||| ||||||||||||||||||    
T  29309844 acctaaaaagttgacttttgcttataatagtga 29309876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 37288661 - 37288697
Alignment:
Q  31 atttttgcttataatagtgaccggaggaagtagttta 67  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  37288661 atttttgtttataatagtgaccggaggaagtaattta 37288697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 6975038 - 6975081
Alignment:
Q  22 aaaaagttgatttttgcttataatagtgaccggaggaagtagtt 65  Q
    |||| |||||||||||||||||||||||||||||||| ||||||    
T  6975038 aaaatgttgatttttgcttataatagtgaccggaggatgtagtt 6975081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 484037 - 484073
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggag 56  Q
    |||||| ||||||||||||||||||||||||||||||    
T  484037 ctaaaatgttgatttttgcttataatagtgaccggag 484073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 2198085 - 2198043
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||| || ||||||||||||||||||||||||| ||||    
T  2198085 ctaaaaagtggagttttgcttataatagtgaccggagggagta 2198043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 22720609 - 22720651
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||| || ||||||||||||||||||||||||| ||||    
T  22720609 ctaaaaagtggagttttgcttataatagtgaccggagggagta 22720651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 30938939 - 30938905
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccgga 55  Q
    |||||||||||||||| ||||||||||||||||||    
T  30938939 taaaaagttgatttttccttataatagtgaccgga 30938905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 19934675 - 19934638
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| || |||||||||||||||||||||||||    
T  19934675 ctaaaaagtggaattttgcttataatagtgaccggagg 19934638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 29006939 - 29006976
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||||||| || ||||||||||||||||||||||||||    
T  29006939 taaaaagtggaattttgcttataatagtgaccggagga 29006976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 36786261 - 36786290
Alignment:
Q  28 ttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||||||||||||||||||||||||    
T  36786261 ttgatttttgcttataatagtgaccggagg 36786290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 44755494 - 44755465
Alignment:
Q  27 gttgatttttgcttataatagtgaccggag 56  Q
    ||||||||||||||||||||||||||||||    
T  44755494 gttgatttttgcttataatagtgaccggag 44755465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 47181595 - 47181558
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggagga 58  Q
    ||||| || |||||||||||||||||||||||||||||    
T  47181595 taaaatgtagatttttgcttataatagtgaccggagga 47181558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 52817670 - 52817707
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  52817670 ctaaaaagtggatttttgcttatattagtgaccggagg 52817707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 54164850 - 54164813
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| || |||||||||||||||||||||||||    
T  54164850 ctaaaaagtggaattttgcttataatagtgaccggagg 54164813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 54164916 - 54164953
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  54164916 ctaaaaaatagatttttgcttataatagtgaccggagg 54164953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 10065105 - 10065061
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||||| |||||||||||||  ||||||||||| ||||    
T  10065105 acctaaaaagttgttttttgcttataaatgtgaccggagggagta 10065061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 38382079 - 38382111
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgacc 52  Q
    |||||| ||||||||||||||||||||||||||    
T  38382079 ctaaaacgttgatttttgcttataatagtgacc 38382111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 24981944 - 24981982
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  24981944 ctaaaatgttgatttttgcttataatagtgaccggagga 24981982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 9676005 - 9675961
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||    
T  9676005 acctaaaaagttaatttttacttataatagtgaccggagggagta 9675961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 29043493 - 29043449
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||||||||||||||||||||| ||| |||||| ||||    
T  29043493 acctaaaaagttgatttttgcttataataatgagcggagggagta 29043449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 50308665 - 50308633
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgacc 52  Q
    |||||||||||||||||||||||||||||||||    
T  50308665 ctaaaaagttgatttttgcttataatagtgacc 50308633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 14214589 - 14214550
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  14214589 acctaaaaagtgaatttttgcttataatagtgaccggagg 14214550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 52923424 - 52923463
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  52923424 acctaaaaagtagatttttgcttataatagtgacctgagg 52923463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 5431378 - 5431336
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    |||||||||  |||||||||||||||||||||||||| |||||    
T  5431378 ctaaaaagtgaatttttgcttataatagtgaccggagtaagta 5431336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 29043572 - 29043610
Alignment:
Q  28 ttgatttttgcttataatagtgaccggaggaagtagttt 66  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  29043572 ttgatttttgcttataatagtaaccggagggagtagttt 29043610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 639836 - 639799
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  639836 ctaaaaagtggatttttgcttatattagtgaccggagg 639799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 1409152 - 1409189
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||||| | |||||||||||||||||||||||||||    
T  1409152 ctaaaaagataatttttgcttataatagtgaccggagg 1409189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 4060274 - 4060311
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  4060274 ctaaaaagtagatttttgcttatattagtgaccggagg 4060311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 6340671 - 6340712
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaa 59  Q
    |||||||||||| |||||||||||||||| |||| |||||||    
T  6340671 acctaaaaagttaatttttgcttataataatgacaggaggaa 6340712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 8338712 - 8338675
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| || ||||||||||||||||||||||||||||    
T  8338712 ctaaaatgtagatttttgcttataatagtgaccggagg 8338675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 17490525 - 17490488
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  17490525 ctaaaaagtggatttttgcttatattagtgaccggagg 17490488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 18353609 - 18353572
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  18353609 ctaaaatgttgatttttacttataatagtgaccggagg 18353572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 19175691 - 19175728
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  19175691 ctaaaaagtagatttttgcttataatagtgactggagg 19175728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 27206862 - 27206899
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  27206862 ctaaatagttgatttttgcttatattagtgaccggagg 27206899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 28038930 - 28038967
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  28038930 ctaaaaagttgatttttgcttataatagtaatcggagg 28038967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 31008296 - 31008259
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  31008296 ctaaaaagtagatttttgcttatattagtgaccggagg 31008259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 33604094 - 33604131
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  33604094 ctaaaaagtggatttttgcttatattagtgaccggagg 33604131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 34768379 - 34768424
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagtag 63  Q
    |||||||||||  | |||||||||||||||||||||||| ||||||    
T  34768379 acctaaaaagtcaacttttgcttataatagtgaccggagaaagtag 34768424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 37734876 - 37734913
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  37734876 ctaaaaagtggatttttgcttatattagtgaccggagg 37734913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 45115273 - 45115310
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| || ||||||||||||||||||||||||||||    
T  45115273 ctaaaatgtagatttttgcttataatagtgaccggagg 45115310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 48022632 - 48022595
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  48022632 ctaaaaagtggatttttgcttatattagtgaccggagg 48022595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 3013714 - 3013750
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  3013714 taaaatgttaatttttgcttataatagtgaccggagg 3013750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 5431443 - 5431479
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggag 56  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  5431443 ctaaaaagttaatttttgcttatattagtgaccggag 5431479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 15057694 - 15057654
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggaggaag 60  Q
    ||||||||| | ||||||||||||||||||| |||||||||    
T  15057694 ctaaaaagtagttttttgcttataatagtgatcggaggaag 15057654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 27864520 - 27864564
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||| |||||||||  ||||||||||||||||||| ||||    
T  27864520 acctaaaaaattgatttttatttataatagtgaccggaggtagta 27864564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 38758401 - 38758445
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    |||||||||||   |||||||||||||||||||||||||| ||||    
T  38758401 acctaaaaagtgtttttttgcttataatagtgaccggagggagta 38758445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 25245246 - 25245283
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| |||||||||||||||||||||||||||||||    
T  25245246 ctaaaatgttgatttttgcttataatagtgaccggagg 25245283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 2456375 - 2456331
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||| ||||||||||||||||||||| |||||| ||||    
T  2456375 acctaaaaagtagatttttgcttataatagtgatcggagggagta 2456331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 8127930 - 8127974
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggaggaagtagt 64  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||||    
T  8127930 ctaaacagttgatttttgtttataatagtgaccggagggagtagt 8127974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 34750367 - 34750323
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||| ||||||||||||||||||| |||||||| ||||    
T  34750367 acctaaaaagtagatttttgcttataatagtaaccggagggagta 34750323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 25079244 - 25079206
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  25079244 ctaaaaagtagatttttgcttatattagtgaccggagga 25079206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 31115712 - 31115750
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  31115712 ctaaaatgttgatttttgcttataatagtgaccgaagga 31115750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 2943249 - 2943216
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccg 53  Q
    |||||| |||||||||||||||||||||||||||    
T  2943249 ctaaaatgttgatttttgcttataatagtgaccg 2943216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 10095756 - 10095719
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  10095756 ctaaaatgttaatttttgcttataatagtgaccggagg 10095719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 34670392 - 34670347
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagtag 63  Q
    ||||||||||||| |||||||||||||  ||||||||||| |||||    
T  34670392 acctaaaaagttgttttttgcttataaatgtgaccggagggagtag 34670347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 38238887 - 38238924
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  38238887 ctaaaaagtagatttttgcttatattagtgaccggagg 38238924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 3967744 - 3967700
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||| | ||||||||||||||||||| |||||| ||||    
T  3967744 acctaaaaagtagttttttgcttataatagtgatcggagggagta 3967700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 3967806 - 3967842
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccgg 54  Q
    ||||||||||| | |||||||||||||||||||||||    
T  3967806 acctaaaaagtagttttttgcttataatagtgaccgg 3967842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 29205341 - 29205313
Alignment:
Q  28 ttgatttttgcttataatagtgaccggag 56  Q
    |||||||||||||||||||||||||||||    
T  29205341 ttgatttttgcttataatagtgaccggag 29205313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 43103108 - 43103072
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  43103108 taaaatgttaatttttgcttataatagtgaccggagg 43103072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 46022585 - 46022553
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgacc 52  Q
    |||||| ||||||||||||||||||||||||||    
T  46022585 ctaaaacgttgatttttgcttataatagtgacc 46022553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 47535006 - 47534962
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggaggaagtagtt 65  Q
    |||||||| | |||||||||||||||||||||||||  |||||||    
T  47535006 taaaaagtagttttttgcttataatagtgaccggagagagtagtt 47534962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 331835 - 331798
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggagga 58  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  331835 taaaatgttgatttttgcttataatagtgaccggagga 331798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 52215983 - 52216020
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| |||||||||||||||||||||||||||||||    
T  52215983 ctaaaatgttgatttttgcttataatagtgaccggagg 52216020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 21217203 - 21217165
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||||| || |||||||||||||||||||||||||||||    
T  21217203 ctaaaatgtagatttttgcttataatagtgaccggagga 21217165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 24075484 - 24075446
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagga 58  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  24075484 ctaaaatgttgttttttgcttataatagtgaccggagga 24075446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 39579596 - 39579626
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtga 50  Q
    |||||||||||||||||||||||||||||||    
T  39579596 ctaaaaagttgatttttgcttataatagtga 39579626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 331901 - 331938
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  331901 ctaaaatgttaatttttgcttataatagtgaccggagg 331938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 7882318 - 7882281
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  7882318 ctaaaatgttaatttttgcttataatagtgaccggagg 7882281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 8504887 - 8504850
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| || ||||||||||||||||||||||||||||    
T  8504887 ctaaaatgtagatttttgcttataatagtgaccggagg 8504850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 27224617 - 27224580
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  27224617 ctaaaatgttgatttttgtttataatagtgaccggagg 27224580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 29565146 - 29565109
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  29565146 ctaaaaaattgatttttgcttatattagtgaccggagg 29565109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 37897786 - 37897827
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||| |||||||||||||||||||||||||| |||| ||||    
T  37897786 taaaatgttgatttttgcttataatagtgaccagagggagta 37897827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 50335036 - 50335065
Alignment:
Q  33 ttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||||||||||||||||||||||    
T  50335036 ttttgcttataatagtgaccggaggaagta 50335065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 54595827 - 54595794
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccg 53  Q
    |||||| |||||||||||||||||||||||||||    
T  54595827 ctaaaatgttgatttttgcttataatagtgaccg 54595794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 21217269 - 21217301
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgacc 52  Q
    |||||| ||||||||||||||||||||||||||    
T  21217269 ctaaaacgttgatttttgcttataatagtgacc 21217301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 26331317 - 26331361
Alignment:
Q  18 acctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    ||||||||||||| |||||||||||||  ||||||||||| ||||    
T  26331317 acctaaaaagttgttttttgcttataaatgtgaccggagggagta 26331361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 36362640 - 36362604
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggagg 57  Q
    |||| |||||||||||||||||| |||||||||||||    
T  36362640 taaagagttgatttttgcttatattagtgaccggagg 36362604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 40639813 - 40639849
Alignment:
Q  21 taaaaagttgatttttgcttataatagtgaccggagg 57  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  40639813 taaaatgttaatttttgcttataatagtgaccggagg 40639849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 44382915 - 44382947
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgacc 52  Q
    |||||| ||||||||||||||||||||||||||    
T  44382915 ctaaaacgttgatttttgcttataatagtgacc 44382947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 42800 - 42758
Alignment:
Q  20 ctaaaaagttgatttttgcttataatagtgaccggaggaagta 62  Q
    |||||||||||||||||| |||||||| | |||||||||||||    
T  42800 ctaaaaagttgatttttgattataataataaccggaggaagta 42758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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