View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11201_low_45 (Length: 241)
Name: NF11201_low_45
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_45 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 39543413 - 39543199
Alignment:
| Q |
11 |
agcagagacagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactggtgga |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
39543413 |
agcagtgacagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtgga |
39543314 |
T |
|
| Q |
111 |
gaagagggaccaacatttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttc |
210 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39543313 |
gaagaaggaccaacatttgtggtatcttcagggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttc |
39543214 |
T |
|
| Q |
211 |
cttggggaggtagtg |
225 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39543213 |
cttggggaggtagtg |
39543199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 39553432 - 39553218
Alignment:
| Q |
11 |
agcagagacagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactggtgga |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
39553432 |
agcagtgacagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtgga |
39553333 |
T |
|
| Q |
111 |
gaagagggaccaacatttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttc |
210 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39553332 |
gaagaaggaccaacatttgttgtatcttcagggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttc |
39553233 |
T |
|
| Q |
211 |
cttggggaggtagtg |
225 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39553232 |
cttggggaggtagtg |
39553218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 39586523 - 39586336
Alignment:
| Q |
27 |
catttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactggtggagaagagggaccaacat |
126 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||| ||| ||||| |||| |
|
|
| T |
39586523 |
catttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatggaccgacat |
39586424 |
T |
|
| Q |
127 |
ttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttg |
214 |
Q |
| |
|
||||||||||||| ||||| || ||| ||||||||||||| ||||| |||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
39586423 |
ttgtggtgtcttctgggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttg |
39586336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 17503135 - 17503040
Alignment:
| Q |
126 |
tttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggt |
221 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| || ||||| |||||||||||||| || |||||||| ||| || |||||||||||||||||| |
|
|
| T |
17503135 |
tttgtggtatcttccgggcaaagatttccggaagacaaggtggattttggatggggaaaagttgtgtttgcatcctaccattttccttggggaggt |
17503040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 17503234 - 17503152
Alignment:
| Q |
21 |
gaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcac |
103 |
Q |
| |
|
||||| |||||| | || || |||||||||||||||| |||||||| ||||| |||||||| | ||||||| ||||| |||| |
|
|
| T |
17503234 |
gaggaacatttcctagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttatagtggtggcac |
17503152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University