View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_47 (Length: 238)
Name: NF11201_low_47
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 4555027 - 4554799
Alignment:
| Q |
4 |
tattactgtattcctacaccatgactatataagttgtaacctctatcatttgatcaataatgagaatattatt-attcacttcttctctcataataataa |
102 |
Q |
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| T |
4555027 |
tattactgtattcctagaccatgactatataagttgtaacctctatcatttgatcaataatgagaatattattcattcacttcttctctcataataataa |
4554928 |
T |
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| Q |
103 |
taat---gatttgacatgtaaggtcatgcatcttatttgacgttattacatgagagttatgacatgtagtaaacgtcatttaattgtgaattggtaaggg |
199 |
Q |
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| T |
4554927 |
taataatgatttgacatttaaggtcatgcatcttatttgacgttattacatgagagttatgacatgtagtaaacgtcatttaattgtgaattcgtaaggg |
4554828 |
T |
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| Q |
200 |
aatgagatgtaataatacataaatgatga |
228 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
4554827 |
aatgagatgtaataatacataaattatga |
4554799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 4555134 - 4555080
Alignment:
| Q |
102 |
ataatgatttgacatgtaaggtcatgcatcttatttgacgttattacatgagagttat |
159 |
Q |
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| T |
4555134 |
ataatgatttgacatgtaaggttatgcaccttatttgac---attacatgagagttat |
4555080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 4938769 - 4938684
Alignment:
| Q |
15 |
tcctacaccatgactatataagttgtaacctctatcatttgatcaataatgagaatattattat-tcacttcttctctcataataa |
99 |
Q |
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| T |
4938769 |
tcctgcaccatgcctatataagttgtaatccttatcatttgatcaataacaagaatattattttctcatttcttatctcataataa |
4938684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 5023859 - 5023774
Alignment:
| Q |
15 |
tcctacaccatgactatataagttgtaacctctatcatttgatcaataatgagaatattattat-tcacttcttctctcataataa |
99 |
Q |
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|||| ||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||| | ||| ||||| ||||||||||| |
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| T |
5023859 |
tcctgcaccatgcctatataagttgtaatccttatcatttgatcaataacaagaatattattttctcatttcttatctcataataa |
5023774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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