View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_48 (Length: 237)
Name: NF11201_low_48
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 43016713 - 43016493
Alignment:
| Q |
9 |
agtaaaatgtggcacacatatggctgtttcaagataacaaaaacagattatctataataatgattttnnnnnnntagt-----tattttagccgaagcgt |
103 |
Q |
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| T |
43016713 |
agtaaaatgtggcacacatatggctgtttcaagataacaaaaacagattatctataataatgattttaaaaaaatagtaacgttattttagcccaagcgt |
43016614 |
T |
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| Q |
104 |
ggcagagtgtgttgagatatttagtttagttttcctacttttgttttcatgaaaatacggtttacatctatatacaacatcgaaaataagagaaaaaata |
203 |
Q |
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| T |
43016613 |
gacagagtgtgtggagatatttagtttagtttgcctacttttgttttcatgaaaatacggtttacatctatatacagcatcgaaaataagagaaaaaata |
43016514 |
T |
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| Q |
204 |
aacatattaattccacttatt |
224 |
Q |
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| T |
43016513 |
aacatattaattccacttatt |
43016493 |
T |
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