View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_50 (Length: 218)
Name: NF11201_low_50
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 25779069 - 25778890
Alignment:
| Q |
21 |
agacaagagaaggaaaaggaataggcaccatcacaaccctatgtaaagaaaacattgattttattgcaccatctaaagccaaaaagatttttccattctt |
120 |
Q |
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| T |
25779069 |
agacaagagaaggaaaaggaataggcaccatcacaaccctatgttaagaaaacattgattttattgcaccatctaaagccaaaaagatttttccattctt |
25778970 |
T |
|
| Q |
121 |
cagttacattatacatgtaagtgannnnnnnaatgtaaaggagagattctggtccctgttaaggatatatcagatattgg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25778969 |
cagttacattatacatgtaagtgatttttttaatgtaaaggagagattctggtccctgttaaggatatatcagatattgg |
25778890 |
T |
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