View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_51 (Length: 215)
Name: NF11201_low_51
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 46463091 - 46463290
Alignment:
| Q |
1 |
tcttcacgaggtaatcgtagataaaagcatctaacctgtttccaatccccaaaaaattataaagatagctagttagaaatggagagaataagtacatgtt |
100 |
Q |
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| T |
46463091 |
tcttcacgaggtaatcgtagataaaagcatctaacctgtttccaatccccaaaaaattataaagatagctagttagaaatggagagaataagtacatgtt |
46463190 |
T |
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| Q |
101 |
tgtaatgaatcattatgtttgctatgaatcattgacactgacacgtcgataccaataataatttnnnnnnnntgaatgcaatcacgtgtatcagtgttat |
200 |
Q |
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| T |
46463191 |
tgtaatgaatcattatgtttgctatgaatcattgacactgacacgtcgataccaataataattttaaaaaaatgaatgcaatcacgtgtatcggtgttat |
46463290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 52067083 - 52067112
Alignment:
| Q |
135 |
acactgacacgtcgataccaataataattt |
164 |
Q |
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| T |
52067083 |
acactgacacgtcgataccaataataattt |
52067112 |
T |
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