View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_6 (Length: 607)
Name: NF11201_low_6
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 172 - 590
Target Start/End: Original strand, 9894784 - 9895205
Alignment:
| Q |
172 |
catgaaagtttgactttccatgatgtcaccattgttcatagtcatcccaacatagccatgacccatcattgccatttt--ttcatccctagatgtcaatg |
269 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9894784 |
catgaaaatttgactttccatgatgtcaccattgttcatagtcatcccaacatagccatgacccatcattgccattttttttcatccctagatgtcaatg |
9894883 |
T |
|
| Q |
270 |
gtggtgccaaccttctcctaacgtccttcaatttttggtcaatcaaccaacaaagatgttttgaatcaaccaaggagatattattctgcactaatttgcc |
369 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
9894884 |
gtggtgccaaccttctactaacgtccttccatttttggtcaatcaaccaacaaagatgttttgaatcaaccaaggagatattattctgcattaatttgcc |
9894983 |
T |
|
| Q |
370 |
ttcacaaagacattgaaacattagcataaccatctctttctcatagttttcatgcctttgtgtcttcagtttctctttggccttcagaaccctttgtatc |
469 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9894984 |
ttcacaaagacattgaaacatgagcataaccatctctttctcatagttttcatgcctttgtgtcttcagtttctctttggccttcagaaccctttgtatc |
9895083 |
T |
|
| Q |
470 |
atataagtctcttggttcatcattttctgactcttctcccactcagacattgctctgaa-ttttgagagcactgtttggactccctgtggtgatggccag |
568 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9895084 |
atataagtctcttggttcatcattttctggctcttctcccactcagacattgttctgaatttttgagagcactgtttggactccctgtggtgatggccag |
9895183 |
T |
|
| Q |
569 |
atcttcggttgaggctcatatg |
590 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
9895184 |
atcttcggttgaggctcatatg |
9895205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 276 - 590
Target Start/End: Original strand, 11247952 - 11248266
Alignment:
| Q |
276 |
ccaaccttctcctaacgtccttcaatttttggtcaatcaaccaacaaagatgttttgaatcaaccaaggagatattattctgcactaatttgccttcaca |
375 |
Q |
| |
|
|||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |||||| || || |||||| | |
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|
| T |
11247952 |
ccaaccttctaccaacctccttcaatttctggtcaatcaaccaacaaagatgttttgaatcaaccaatgacatattactctgcataaagttaccttcata |
11248051 |
T |
|
| Q |
376 |
aagacattgaaacattagcataaccatctctttctcatagttttcatgcctttgtgtcttcagtttctctttggccttcagaaccctttgtatcatataa |
475 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||| | ||| ||||||||||| |||||||||||||||||||||| |||||||||| | ||||||| |
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| T |
11248052 |
aagatattgaaacatcagcattgccatctctttctctttgttgtcatgcctttgcatcttcagtttctctttggcctttagaaccctttctttcatatat |
11248151 |
T |
|
| Q |
476 |
gtctcttggttcatcattttctgactcttctcccactcagacattgctctgaattttgagagcactgtttggactccctgtggtgatggccagatcttcg |
575 |
Q |
| |
|
|| ||||| |||| |||||||| ||||| |||| |||| ||||| |||||||||||||||||||||||| ||||| |||| ||||||||| ||||| | |
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|
| T |
11248152 |
gtttcttgattcaccattttcttgctcttatccctttcagtcattgttctgaattttgagagcactgtttgaactccttgtgatgatggccatatcttag |
11248251 |
T |
|
| Q |
576 |
gttgaggctcatatg |
590 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
11248252 |
gttgaggctcgtatg |
11248266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 35 - 278
Target Start/End: Original strand, 11247666 - 11247909
Alignment:
| Q |
35 |
aaattgtgatagatccatctcaaagggtacataaaacaaatacatgaattcattcaaagcagcagattgggcaaaaatctaggatcgacctcgccaaagg |
134 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||||||||||| ||| ||||||||| ||| | ||||||||||||||||||||||||||||||||| | |
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|
| T |
11247666 |
aaattatgatagatccacctcaaagggtttgcaaaacaaatacctgatttcattcaaggcattatattgggcaaaaatctaggatcgacctcgccaaatg |
11247765 |
T |
|
| Q |
135 |
gtactgtctcatctcctttatcattcatcatcaatcccatgaaagtttgactttccatgatgtcaccattgttcatagtcatcccaacatagccatgacc |
234 |
Q |
| |
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| |||||||||||||| ||| ||||||||||||| ||||| ||| ||||||||| ||||| |||||||| |||| |||||||||| ||| ||||||||| |
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|
| T |
11247766 |
gaactgtctcatctccattaccattcatcatcaagcccatcaaaagttgactttcaatgatttcaccattattcacagtcatcccagcatggccatgacc |
11247865 |
T |
|
| Q |
235 |
catcattgccattttttcatccctagatgtcaatggtggtgcca |
278 |
Q |
| |
|
|||| ||||||||| ||| | ||| ||||||||||||||||||| |
|
|
| T |
11247866 |
catccttgccatttcttcgttcctggatgtcaatggtggtgcca |
11247909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 35 - 275
Target Start/End: Complemental strand, 11108899 - 11108659
Alignment:
| Q |
35 |
aaattgtgatagatccatctcaaagggtacataaaacaaatacatgaattcattcaaagcagcagattgggcaaaaatctaggatcgacctcgccaaagg |
134 |
Q |
| |
|
||||| ||||||||||||| ||||||| | |||||||||||||||||||||| || | || ||||| ||||||| ||||||||||| |||||||| | |
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|
| T |
11108899 |
aaattatgatagatccatcacaaagggcaagcaaaacaaatacatgaattcatttaaggtagtagatttggcaaaaccctaggatcgacttcgccaaatg |
11108800 |
T |
|
| Q |
135 |
gtactgtctcatctcctttatcattcatcatcaatcccatgaaagtttgactttccatgatgtcaccattgttcatagtcatcccaacatagccatgacc |
234 |
Q |
| |
|
| |||| ||||||||| ||| |||||||||||| |||||||||| |||| |||| ||| ||| |||| ||||||| || ||| ||| |||| |||| |
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|
| T |
11108799 |
gcactgactcatctccattactattcatcatcaagcccatgaaagattgaatttcaatgtcgtcgtcattattcataggtattccagcatggccaggacc |
11108700 |
T |
|
| Q |
235 |
catcattgccattttttcatccctagatgtcaatggtggtg |
275 |
Q |
| |
|
|||||||||||||| ||||| || ||||| |||||||||| |
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|
| T |
11108699 |
catcattgccatttcttcattactggatgtaaatggtggtg |
11108659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 11108660 - 11108580
Alignment:
| Q |
305 |
tggtcaatcaaccaacaaagatgttttgaatcaaccaaggagatattattctgcactaatttgccttcacaaagacattga |
385 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||| || ||||||||||||| ||||||| |||| ||||||||||| |
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|
| T |
11108660 |
tggtcagtcaaccaaaaaagatgttttgaatcaaccaatgacatattattctgcataaatttgctttcaaaaagacattga |
11108580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 9894723 - 9894781
Alignment:
| Q |
88 |
tcaaagcagcagattgggcaaaa--atctaggatcgacctcgccaaagggtactgtctc |
144 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9894723 |
tcaaagtagcagattgggcaaaaaaatctaggatcgacctcgccaaagggtactgtctc |
9894781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 9894577 - 9894626
Alignment:
| Q |
28 |
ggatacaaaattgtgatagatccatctcaaagggtacataaaacaaatac |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
9894577 |
ggatacaaaattgtgatagatccatctcaaagggcacacaaaacaaatac |
9894626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 497
Target Start/End: Complemental strand, 11106780 - 11106708
Alignment:
| Q |
425 |
ctttgtgtcttcagtttctctttggccttcagaaccctttgtatcatataagtctcttggttcatcattttct |
497 |
Q |
| |
|
|||||| || ||| |||||||| |||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
11106780 |
ctttgtttcatcaatttctcttcagccttcagaaccctttgtgccaagaaagtctcttggttcatcattttct |
11106708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 588
Target Start/End: Complemental strand, 10987070 - 10986907
Alignment:
| Q |
425 |
ctttgtgtcttcagtttctctttggccttcagaaccctttgtatcatataagtctcttggttcatcattttctgactcttctcccactcagacattgctc |
524 |
Q |
| |
|
|||||| |||| |||||||||| ||||||| ||| |||||| ||| |||| ||||||||||||||||||| | ||| | |||| || ||| |
|
|
| T |
10987070 |
ctttgtttctttagtttctcttcagccttcaaaacactttgtgtcaagaaagtttcttggttcatcattttcttgcacttttggaactcgtgcagtgcca |
10986971 |
T |
|
| Q |
525 |
tgaattttgagagcactgtttggactccctgtggtgatggccagatcttcggttgaggctcata |
588 |
Q |
| |
|
|||||||||||||||| | |||||| || | |||||||||||| |||| |||||| ||||||| |
|
|
| T |
10986970 |
tgaattttgagagcacagattggaccccttctggtgatggccaaatctcaggttgaagctcata |
10986907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 13308835 - 13308728
Alignment:
| Q |
141 |
tctcatctcctttatcattcatcatcaatcccatgaaagtttgactttccatgatgtcaccattgttcatagtcatcccaacatagccatgacccatcat |
240 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| || ||| |||| |||||||||||||||| ||||||| ||||||| || | |||| |||||||| |
|
|
| T |
13308835 |
tctcatctctattatcattcatcatcaaattcataaataattgtctttgcatgatgtcaccattgctcatagttatcccaaaatggtcatggcccatcat |
13308736 |
T |
|
| Q |
241 |
tgccattt |
248 |
Q |
| |
|
|||||||| |
|
|
| T |
13308735 |
tgccattt |
13308728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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