View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_low_9 (Length: 553)
Name: NF11201_low_9
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 12 - 536
Target Start/End: Original strand, 42222896 - 42223417
Alignment:
| Q |
12 |
ttggagtggtcttctttt-ggcgaagggagttgcattgtggtcttctagtttggcttttcctctatttgagatttattgactactttagtttacatgtta |
110 |
Q |
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| T |
42222896 |
ttggagtggtcttctttttggcgaagggagttgcattgtggtcttctagtttggcttttcctctattcgagatttattgactactttagtttacatgtta |
42222995 |
T |
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| Q |
111 |
ttgcgcaggtgaacgtttaagcccttgggtggccgctggatgttttacaatgggcatatcaattctattcttctgaaccttactctgacttgaaatggtt |
210 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42222996 |
ttgcgcaggtgaacgtttaagcccttgggtggccgttggatgttttacaatgggcgtatcaattctattcttctgaaccttactctgacttgaaatgttt |
42223095 |
T |
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| Q |
211 |
ccattttcctttccattcttttcacttgattgatattcaatttgttggttattattctctgtgtaaggggctttttggaatgtaaattttttcccaccca |
310 |
Q |
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| T |
42223096 |
ccattttcctttccattcttttcacttga----tattcaatttgttggttattattctctgtgtaaggggctttttggaatgtaaattttttcccaccca |
42223191 |
T |
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| Q |
311 |
cctcaacatcaaagtcgtgaataacgtattctataacataatgtgctcctgaagactgttacttggtaaataacaattaatatggtgaaatgaaattgac |
410 |
Q |
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| T |
42223192 |
tctcaacatcaaagtcgtgaataacgtattctataacataatgtgctcctgaagactgttacttggtaaataacaattaatatggtgaaatgaaattgac |
42223291 |
T |
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| Q |
411 |
taagaagatatttataaattaaaattctggtgggtggatgcgatctgattacatttcagcccaaaagatgcaagtgcaactctgtaagagaagtgtgctg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223292 |
taagaagatatttataaattaaaattctggtgggtggatgtgatctgattacatttcagcccaaaagatgcaagtgcaactctgtaagagaagtgtgctg |
42223391 |
T |
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| Q |
511 |
cttaataaacttcaggcattgcttta |
536 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42223392 |
cttaataaacttcaggcattgcttta |
42223417 |
T |
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