View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11202_high_1 (Length: 585)
Name: NF11202_high_1
Description: NF11202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11202_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Original strand, 40903992 - 40904545
Alignment:
| Q |
18 |
gttattgataattgttggcctaatgttgatcaggattgtggagagtgtaggcgagggtgtgacacatctaaaaccaggcgatcatgccctgcctgtattc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40903992 |
gttattgataattgttggcctaatgttgatcaggattgtggagagcataggcgagggtgtgacacatctaaaaccaggcgatcatgccctgcctgtattc |
40904091 |
T |
|
| Q |
118 |
acaggggagtgtggggactgtccacattgtatgtcggaggaaagcaacatgtgtgatcttcttaggatcaacactgacaggggtgttatgatcaatgaca |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40904092 |
acaggggagtgtggggactgtccacattgtaagtcggaggaaagcaacatgtgtgatcttcttaggatcaacactgacaggggtgttatgatcaatgaca |
40904191 |
T |
|
| Q |
218 |
accagtcaagattctctattaagggacagcccattcaccatttcgtcggtacatctacattcagcgagtacactgtggttcatgccggatgtgttgcaaa |
317 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40904192 |
accagtcaagattctctcttaagggacagcccattcaccatttcgtcggtacatctacattcagcgagtacactgtggttcatgccggatgtgttgcaaa |
40904291 |
T |
|
| Q |
318 |
gatcaaccctgatgcaccacttgacaaagtttgtattcttagttgtggaatatgcacaggtataggagattccagtgttttgatattaatatataactag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40904292 |
gatcaaccctgatgcaccacttgacaaagtttgtattcttagctgtggaatatgcacaggtataggagattccagtgttttgatattaacatataactag |
40904391 |
T |
|
| Q |
418 |
gatgagtcgatgttttcctatttcaatttgcttccatacttctataggtcttggtgctactatcaatgttgctaaaccaaaacctggttcttctgtcgct |
517 |
Q |
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|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40904392 |
gatgagtctatgttttcgtaattcaatttgcttccatacttctataggtcttggtgctactatcaatgttgctaaaccaaaacccggttcttctgtcgct |
40904491 |
T |
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| Q |
518 |
atctttggacttggagctgttggccttgctgtgtgttactctcttatcttgtgt |
571 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
40904492 |
atctttggacttggagctgttggccttgctgtatgttactctcatatcttgtgt |
40904545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Original strand, 40899427 - 40899967
Alignment:
| Q |
19 |
ttattgataattgttggcctaatgttgatcaggattgtggagagtgtaggcgagggtgtgacacatctaaaaccaggcgatcatgccctgcctgtattca |
118 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
40899427 |
ttattgataattgtcggcacaatgttgatcaggatcgtggagagtgtaggcgagggtgtgacacatctaacaccaggcgatcatgccctgcttgtattca |
40899526 |
T |
|
| Q |
119 |
caggggagtgtggggactgtccacattgtatgtcggaggaaagcaacatgtgtgatcttcttaggatcaacactgacaggggtgttatgatcaatgacaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40899527 |
caggggagtgtggggactgtccacattgtatgtcggaggaaagcaacatgtgtgatcttcttaggatcaacactgacaggggtgttatgatcaatgacaa |
40899626 |
T |
|
| Q |
219 |
ccagtcaagattctctattaagggacagcccattcaccatttcgtcggtacatctacattcagcgagtacactgtggttcatgccggatgtgttgcaaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40899627 |
ccagtcaagattctctattaagggacagcccattcaccatttcgtcggtacatctacattcagcgagtacactgtggttcatgccggatgtgttgcaaag |
40899726 |
T |
|
| Q |
319 |
atcaaccctgatgcaccacttgacaaagtttgtattcttagttgtggaatatgcacaggtataggagattccagtgttttgatattaatatataactagg |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| |||||| |||||||| |||| |
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| T |
40899727 |
atcaaccctgatgcaccacttgacaaagtttgtattctcagctgtggaatatgcacaggtataggagattccaatgtttagatatttatatataattagg |
40899826 |
T |
|
| Q |
419 |
atgagtcgatgttttcctatttcaatttgcttccatacttctataggtcttggtgctactatcaatgttgctaaaccaaaacctggttcttctgtcgcta |
518 |
Q |
| |
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|||||| |||||| ||| |||||||||||||||| ||| || |||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||| |
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| T |
40899827 |
ctgagtctatgtttctctaattcaatttgcttccatgcttttacaggtcttggtgctactatcaatgtagctaaaccaaaacccggttcatctgttgcta |
40899926 |
T |
|
| Q |
519 |
tctttggacttggagctgttggccttgctgtgtgttactct |
559 |
Q |
| |
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||||||| |||||||||||||| ||||| || ||||||||| |
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| T |
40899927 |
tctttggccttggagctgttgggcttgcggtatgttactct |
40899967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 38 - 397
Target Start/End: Original strand, 40880512 - 40880871
Alignment:
| Q |
38 |
taatgttgatcaggattgtggagagtgtaggcgagggtgtgacacatctaaaaccaggcgatcatgccctgcctgtattcacaggggagtgtggggactg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40880512 |
taatgttgatcaggattgtggagagtgtaggtgagggtgtgactcatctgaaaccaggggatcatgccctgcctgtattcacaggggagtgtggggactg |
40880611 |
T |
|
| Q |
138 |
tccacattgtatgtcggaggaaagcaacatgtgtgatcttcttaggatcaacactgacaggggtgttatgatcaatgacaaccagtcaagattctctatt |
237 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40880612 |
tccacattgtaagtcagaggaaagcaacatgtgtgatcttcttaggatcaacactgacaggggtgttatgatcaatgacaatcagtcaagattctctatt |
40880711 |
T |
|
| Q |
238 |
aagggacagcccattcaccatttcgtcggtacatctacattcagcgagtacactgtggttcatgccggatgtgttgcaaagatcaaccctgatgcaccac |
337 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
40880712 |
aagggacagcccattcaccattttgtcggtacatcgacattcagtgaatacactgtggttcatgctggatgtgttgcaaagatcaaccctgatgcacctc |
40880811 |
T |
|
| Q |
338 |
ttgacaaagtttgtattcttagttgtggaatatgcacaggtataggagattccagtgttt |
397 |
Q |
| |
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|||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||||| |
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| T |
40880812 |
ttgataaagtttgtattctcagctgtggaatatgcacaggtataggagattccaatgttt |
40880871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 399 - 557
Target Start/End: Original strand, 40881164 - 40881320
Alignment:
| Q |
399 |
gatattaatatataactaggatgagtcgatgttttcctatttcaatttgcttccatacttctataggtcttggtgctactatcaatgttgctaaaccaaa |
498 |
Q |
| |
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|||||||||||||||||||| ||||| ||| ||||||| |||||||||| | ||| | || |||||||||||||||| ||||||||||||||||| || |
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| T |
40881164 |
gatattaatatataactaggttgagtatatgatttcctaattcaatttgcattcatggt-ct-taggtcttggtgctaccatcaatgttgctaaaccgaa |
40881261 |
T |
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| Q |
499 |
acctggttcttctgtcgctatctttggacttggagctgttggccttgctgtgtgttact |
557 |
Q |
| |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40881262 |
acccggttcttctgttgctatctttggacttggagctgttggccttgctgtatgttact |
40881320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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