View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11202_high_3 (Length: 380)

Name: NF11202_high_3
Description: NF11202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11202_high_3
NF11202_high_3
[»] chr2 (1 HSPs)
chr2 (1-380)||(36057634-36058010)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 36057634 - 36058010
Alignment:
Q  1 agaagcataggattgaagtgttcacttgactactatctctcaaaataaaagcaaatagattgcgtaaaactcttatcaaaacaagaaggtaaataaacta 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36057634 agaaggataggattgaagtgttcacttgactactatctctcaaaataaaagcaaatagattgcgtaaaactcttatcaaaacaagaaggtaaataaacta 36057733  T
Q  101 cggacaaaatccaca-ttttttctgcnnnnnnncaagatatgtgaagaaagattctacacttatcatgtttcttgcagaagaaagaattgaattcttttg 199  Q
    ||||||||||||| | |||||||||        ||||||| ||||||||| ||  ||||  |||||||||||||||| ||||||||||||||||||||||    
T  36057734 cggacaaaatccatatttttttctgtaagaaaacaagatacgtgaagaaaaatattacatgtatcatgtttcttgcataagaaagaattgaattcttttg 36057833  T
Q  200 gttgttcctttaccttcttgttttgagaataatttctcatatatatannnnnnnnagagctactagctaagtgaacactttcattgatggactacttgtc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  36057834 gttgttcctttaccttcttgttttgagaataatttctcatatatct--tttttttagagctactagctaagtgaacactttcattgatggactacttgtc 36057931  T
Q  300 cttctgagtattatatagctcactttgaatgtccaaagtgtgcatgtggtgaatcaaagacaagtgcacaatcaaatctcc 380  Q
    |||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36057932 cttctgagtat--tatagcccactttgaatgtccaaagtgtgcatgtggtgaatcaaagacaagtgcacaatcaaatctcc 36058010  T

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