View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11202_high_5 (Length: 362)
Name: NF11202_high_5
Description: NF11202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11202_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 4929055 - 4928764
Alignment:
| Q |
11 |
caaaggagtaaacgtcacatttatctgtgtaaattccggtttgcagatactctggtgcgatgaaaccatatgtacctgtcagcaaaagcatttagtctaa |
110 |
Q |
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| T |
4929055 |
caaaggagtaaacgtcacatttatctgtgtaagttctggtttgcagatactctggtgcacagaaaccatatggacctgtcagcaaaagcatttagtctaa |
4928956 |
T |
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| Q |
111 |
cttctaaaattatctgcattaaatatgcgaaaagaccaaaattagttcacgacataaaattgcatataccattttagttcttaaag--nnnnnnnnnnac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4928955 |
cttctaaaattatctgcattaaatatgcgaaaagaccaaaattagttcacgacataaaattgcatataccattttagttcttaaagttttttttttttac |
4928856 |
T |
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| Q |
209 |
ttccataatttgtgccggagaatgaaaatattggaacacatttagtgccacattagggtctaacatgtgttgttgagttttattgttctcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4928855 |
ttccataatttgtgccggagaatgaaaatattggaacacatttagtcccacattagggtctaacatgtgttgttgagttttatcgttctcat |
4928764 |
T |
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