View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11202_low_3 (Length: 380)

Name: NF11202_low_3
Description: NF11202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11202_low_3
NF11202_low_3
[»] chr2 (1 HSPs)
chr2 (1-380)||(36057634-36058010)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 36057634 - 36058010
Alignment:
Q  1 agaagcataggattgaagtgttcacttgactactatctctcaaaataaaagcaaatagattgcgtaaaactcttatcaaaacaagaaggtaaataaacta 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36057634 agaaggataggattgaagtgttcacttgactactatctctcaaaataaaagcaaatagattgcgtaaaactcttatcaaaacaagaaggtaaataaacta 36057733  T
Q  101 cggacaaaatccaca-ttttttctgcnnnnnnncaagatatgtgaagaaagattctacacttatcatgtttcttgcagaagaaagaattgaattcttttg 199  Q
    ||||||||||||| | |||||||||        ||||||| ||||||||| ||  ||||  |||||||||||||||| ||||||||||||||||||||||    
T  36057734 cggacaaaatccatatttttttctgtaagaaaacaagatacgtgaagaaaaatattacatgtatcatgtttcttgcataagaaagaattgaattcttttg 36057833  T
Q  200 gttgttcctttaccttcttgttttgagaataatttctcatatatatannnnnnnnagagctactagctaagtgaacactttcattgatggactacttgtc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  36057834 gttgttcctttaccttcttgttttgagaataatttctcatatatct--tttttttagagctactagctaagtgaacactttcattgatggactacttgtc 36057931  T
Q  300 cttctgagtattatatagctcactttgaatgtccaaagtgtgcatgtggtgaatcaaagacaagtgcacaatcaaatctcc 380  Q
    |||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36057932 cttctgagtat--tatagcccactttgaatgtccaaagtgtgcatgtggtgaatcaaagacaagtgcacaatcaaatctcc 36058010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University