View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11202_low_4 (Length: 376)
Name: NF11202_low_4
Description: NF11202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11202_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 3430204 - 3429834
Alignment:
| Q |
1 |
caaggttgacataatggcctcttgtttctctcggttgttgttgctcctgacacttccttagactctccggcaattggtatatcaaaacttaaattcaatt |
100 |
Q |
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| T |
3430204 |
caaggttgacataatggcctcttgtttctctcggttgttgttgctcctgacacttccttagactctccggcaattggtatatcaaaacttaaattcaatt |
3430105 |
T |
|
| Q |
101 |
tgatggaagatcaagagtgggatccttagtattagatcattgtataaaaagcctggttaggagtcatgttcggttggttatctctccaacatgttattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3430104 |
tgatggaagatcaagagtgggatccttagtattagatcattgtataaaaagcctggttaggagtcatgttcggttggttatctctccaacatgttattgg |
3430005 |
T |
|
| Q |
201 |
ttaga--acaatcccaatc---taatacatgtggctccatagaccta------attaattacaattggtttgcatttgttccttaacaaaccttttc--a |
287 |
Q |
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| T |
3430004 |
ttagaatacaatcccaatctaataatacatgtggctccatagacctaattgtcattgattacaattggtttgcatttgttccttaacaaaccttttcata |
3429905 |
T |
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| Q |
288 |
tatagtcgtgatcaatataaacagcctcacttatgtctgatcaaaattgctaattaagatgttcattcctt |
358 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3429904 |
tataggcgtgatcaatataaacagcctcacttatgtctgatcaaaattgctaattaagatgttcattcctt |
3429834 |
T |
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