View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11202_low_6 (Length: 284)
Name: NF11202_low_6
Description: NF11202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11202_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 2569042 - 2568777
Alignment:
| Q |
1 |
attgcatatggagcttatgatgataaggttgatgagagtgagattatagaggcatcaaaggctgcaaatgctcatgattttatatcaagcttaaaagatg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2569042 |
attgcatatggagcttacgatgataaggttgatgagagtgaaattatagaggcatcaaaggctgcaagtgctcatgattttatatcaagcttaaaagatg |
2568943 |
T |
|
| Q |
101 |
gatatgacacattgtgtggtgataaaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaaaggtgtt |
200 |
Q |
| |
|
| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2568942 |
gttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgtt |
2568843 |
T |
|
| Q |
201 |
gcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagttcaagatgctttaga |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2568842 |
gcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttaga |
2568777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 2672417 - 2672152
Alignment:
| Q |
1 |
attgcatatggagcttatgatgataaggttgatgagagtgagattatagaggcatcaaaggctgcaaatgctcatgattttatatcaagcttaaaagatg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2672417 |
attgcatatggagcttatgatgatacggttgatgagagtgagattatagaggcatcaaaggcttcaaatgctcatgattttatatcaagcttaaaagatg |
2672318 |
T |
|
| Q |
101 |
gatatgacacattgtgtggtgataaaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaaaggtgtt |
200 |
Q |
| |
|
| ||||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2672317 |
gttatgatactttgtgtggtgacagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgtt |
2672218 |
T |
|
| Q |
201 |
gcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagttcaagatgctttaga |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2672217 |
gcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttaga |
2672152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 2440282 - 2440547
Alignment:
| Q |
1 |
attgcatatggagcttatgatgataaggttgatgagagtgagattatagaggcatcaaaggctgcaaatgctcatgattttatatcaagcttaaaagatg |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
2440282 |
attgtatatggagcatatgatgataaagttgatgagagtgagattatagaggcatcaaaggctgcaaatgctcacgatttcatatcaagcttaaaagatg |
2440381 |
T |
|
| Q |
101 |
gatatgacacattgtgtggtgataaaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaaaggtgtt |
200 |
Q |
| |
|
| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2440382 |
gttatgatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgtt |
2440481 |
T |
|
| Q |
201 |
gcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagttcaagatgctttaga |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2440482 |
gcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttaga |
2440547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 2592228 - 2592493
Alignment:
| Q |
1 |
attgcatatggagcttatgatgataaggttgatgagagtgagattatagaggcatcaaaggctgcaaatgctcatgattttatatcaagcttaaaagatg |
100 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2592228 |
attgcatatggatcatatgatgataaggttgatgaaagtgaaattatagaggcatcaaaggctgcaaatgctcatgatttcatatcaagcttaaaagatg |
2592327 |
T |
|
| Q |
101 |
gatatgacacattgtgtggtgataaaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaaaggtgtt |
200 |
Q |
| |
|
| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2592328 |
gttatgatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgtt |
2592427 |
T |
|
| Q |
201 |
gcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagttcaagatgctttaga |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2592428 |
gcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttaga |
2592493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 2596601 - 2596336
Alignment:
| Q |
1 |
attgcatatggagcttatgatgataaggttgatgagagtgagattatagaggcatcaaaggctgcaaatgctcatgattttatatcaagcttaaaagatg |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
2596601 |
attgtatatggagcatatgatgataaagttgatgagagtgagattatagaggcatcaaaggctgcaaatgctcacgatttcatatcaagcttaaaagatg |
2596502 |
T |
|
| Q |
101 |
gatatgacacattgtgtggtgataaaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaaaggtgtt |
200 |
Q |
| |
|
| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2596501 |
gttatgatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgtt |
2596402 |
T |
|
| Q |
201 |
gcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagttcaagatgctttaga |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
2596401 |
gcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatactttaga |
2596336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 2641257 - 2640992
Alignment:
| Q |
1 |
attgcatatggagcttatgatgataaggttgatgagagtgagattatagaggcatcaaaggctgcaaatgctcatgattttatatcaagcttaaaagatg |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
2641257 |
attgcatacggagcctatgatgataaagttgatgagagtgagattattcaggcatcaaaggctgcaaatgctcatgatttcatatcaagcttacaagatg |
2641158 |
T |
|
| Q |
101 |
gatatgacacattgtgtggtgataaaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaaaggtgtt |
200 |
Q |
| |
|
| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2641157 |
gttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaaggattgcaatagctagagctatattgaagaatccaaaggtgtt |
2641058 |
T |
|
| Q |
201 |
gcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagttcaagatgctttaga |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2641057 |
acttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtgcaagatgctttaga |
2640992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 2623772 - 2624037
Alignment:
| Q |
1 |
attgcatatggagcttatgatgataaggttgatgagagtgagattatagaggcatcaaaggctgcaaatgctcatgattttatatcaagcttaaaagatg |
100 |
Q |
| |
|
|||||||||||| | |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2623772 |
attgcatatggatcatatggtgatcaggttgatgagagtgaaattatagaggcatcaaaggctgcaaatgctcatgatttcatatcaagcttaaaagatg |
2623871 |
T |
|
| Q |
101 |
gatatgacacattgtgtggtgataaaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaaaggtgtt |
200 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |
|
|
| T |
2623872 |
gatatgacacattgtgtggtgacagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattaaagaatccagatgtgtt |
2623971 |
T |
|
| Q |
201 |
gcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagttcaagatgctttaga |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
2623972 |
gcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagacactttaga |
2624037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 2451007 - 2451269
Alignment:
| Q |
1 |
attgcatatggagcttatgatgataaggttgatgagagtgagattatagaggcatcaaaggctgcaaatgctcatgattttatatcaagcttaaaagatg |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2451007 |
attgcatatggagcatatga---taaggttgatgagagtgagattatagatgcagctaaggctgcaaatgctcatgattttatatcaagcttaaaatatg |
2451103 |
T |
|
| Q |
101 |
gatatgacacattgtgtggtgataaaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaaaggtgtt |
200 |
Q |
| |
|
| ||||| |||||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2451104 |
gttatgagacattgtgtggtgatagaggagttcaactttctggtggtcaaaagcaaaggattgcaatagctagagctatattgaagaatccaaaggtgtt |
2451203 |
T |
|
| Q |
201 |
gcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagttcaagatgctttaga |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
2451204 |
gcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagtgcaagatgctttaga |
2451269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 39 - 232
Target Start/End: Complemental strand, 17870415 - 17870222
Alignment:
| Q |
39 |
tgagattatagaggcatcaaaggctgcaaatgctcatgattttatatcaagcttaaaagatggatatgacacattgtgtggtgataaaggagttcaactt |
138 |
Q |
| |
|
|||||| ||||||||||||| | || |||||||||||||| || |||| || |||||||| ||||| |||| |||||| || |||||||| |||||| |
|
|
| T |
17870415 |
tgagatcatagaggcatcaagagtagccaatgctcatgatttcattgcaagtttgaaagatgggtatgagacatggtgtggggacaaaggagtgcaactt |
17870316 |
T |
|
| Q |
139 |
agtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgata |
232 |
Q |
| |
|
|| || ||||||||||| || |||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
17870315 |
tcaggggggcaaaaacaaaggatagcaatagctagagccatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcacttgata |
17870222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 5766109 - 5766170
Alignment:
| Q |
132 |
tcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaa |
193 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||| ||||| || ||||||||||| |||| |
|
|
| T |
5766109 |
tcaactttctggtggacaaaagcaaagaattgcaattgctagggcaatattgaagaacccaa |
5766170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 5823502 - 5823563
Alignment:
| Q |
132 |
tcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaa |
193 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||| || || || |||||||||||||||| |
|
|
| T |
5823502 |
tcaactttctggtggacaaaagcaaagaattgcaattgcaagggccatattgaagaatccaa |
5823563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 5832098 - 5832005
Alignment:
| Q |
132 |
tcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgca |
225 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||| || || || ||||||||||| ||||| | | ||| | |||||||||||||||||| |
|
|
| T |
5832098 |
tcaactttctggtggacaaaagcaaagaattgcaattgcaagggcaatattgaagaacccaaaaatccttcttcttgatgaagcaacaagtgca |
5832005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 7861840 - 7861784
Alignment:
| Q |
142 |
ggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccaaaggtg |
198 |
Q |
| |
|
||||| ||||||||||||||||| ||||| || || ||||||||||| |||||||| |
|
|
| T |
7861840 |
ggtggacaaaaacaaagaattgctatagcaagggcaatattgaagaaatcaaaggtg |
7861784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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