View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11202_low_7 (Length: 284)
Name: NF11202_low_7
Description: NF11202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11202_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 34545960 - 34546200
Alignment:
| Q |
18 |
ctaaatactttagacaatttagtacgggctttacatttcgttcactgatttttatattctacatagtaaaatacttagatatacacaacataactttgtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34545960 |
ctaaatactttagacaatttagtacgggctttacatttcgttcactgatttttatattctacatagtaaaatacttagatatacacaacataactttgtg |
34546059 |
T |
|
| Q |
118 |
aaacgaagaatcagaagtttcaacaaacataaaaataaaattacttcagatagtttcctatatgattaaaactatttccagtctttcaaatgtatgtcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34546060 |
aaacgaagaatcagaagtttcaacaaacataaaaataaaaatacttcagatagtttcctatatgattaaaactatttccagtctttcaaatgtatgtcaa |
34546159 |
T |
|
| Q |
218 |
aatctaatcccaccccaagatgaacttgatttttattagaa |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34546160 |
aatctaatcccaccccaagatgaacttgattttgattagaa |
34546200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University