View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11203_high_13 (Length: 250)
Name: NF11203_high_13
Description: NF11203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11203_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 40644016 - 40644254
Alignment:
| Q |
1 |
ttcaaaagttcacccacctccgcacatgtgtcttcaaatctgatctgtcctattccattgggcaacaaaaaaggacatataacaagaagatatatcatat |
100 |
Q |
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| T |
40644016 |
ttcaaaagttcacccacctccgcacatgtgtcttcaaatctgatctgtcctattccattgggcaacaaaaaaggacatataacaagaagatatatcatat |
40644115 |
T |
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| Q |
101 |
aatctgacaacaattgacttgtatagcgactttggagagtagcggggtttaatttttgaggctcattatcatcggaagaattacaaagatctgtagcaat |
200 |
Q |
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| T |
40644116 |
aatctgacaacaattgacttgtatagcgactttggagagtagcggggtttaagttttgaggctcattatcatcggaagaattacaaagatctgtagcaat |
40644215 |
T |
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| Q |
201 |
atgccaaaggagaatgctctggtcaaactctacctctct |
239 |
Q |
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| T |
40644216 |
atgccaaaggagaatgctctggtcaaactctacctctct |
40644254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 40652686 - 40652921
Alignment:
| Q |
1 |
ttcaaaagttcacccacctccgcacatgtgtcttcaaatctgatctgtcctattccattgggcaacaaaaaaggacatataacaagaagatatatcatat |
100 |
Q |
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|||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| |
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| T |
40652686 |
ttcaaaagttcatccacctctgcacacgtgtcttcaaatctgatctgtcctattccattgggcagcaaaaaagggcatacaacaagaagatatatcatat |
40652785 |
T |
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| Q |
101 |
aatctgacaacaattgacttgtatagcgactttggagagtagcggggtttaatttttgaggctcattatcatcggaagaattacaaagatctgtagcaat |
200 |
Q |
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| T |
40652786 |
aatccgacaacaattggcttttttcacgactttgaagggcaatgtgatttatgttttgagactcatcatcatctgaagaataacaaagatctgtagcaat |
40652885 |
T |
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| Q |
201 |
atgccaaaggagaatgctctggtcaaactctacctc |
236 |
Q |
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| T |
40652886 |
atgccaaagcagaatactctgatcaaactctacctc |
40652921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 40642718 - 40642750
Alignment:
| Q |
23 |
cacatgtgtcttcaaatctgatctgtcctattc |
55 |
Q |
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| T |
40642718 |
cacatgtgtcttcaaatctgatctgtcatattc |
40642750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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