View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11203_high_3 (Length: 446)
Name: NF11203_high_3
Description: NF11203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11203_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Complemental strand, 1134093 - 1133679
Alignment:
| Q |
15 |
gaaagaatggagtaatttggtcttataaattgataaatactattagaatttctgtctaagctaaaaatatagaatatcggtttaagctaaaaatatattn |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1134093 |
gaaagaatggagtaatttggtcttataaattgatagatactattagaatttctgtctaagctaaaaatatagaatatcggtttaagctaaaaatatatta |
1133994 |
T |
|
| Q |
115 |
nnnnnnntgggagacataataacatgttaaattgataatttcataagtgtatannnnnnngtcaataacttcataaatgtatctaaaactaagtgaataa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1133993 |
aaaaaaatgggagacataataacatgttaaattgataatttcataagtgtatatttttttgtcaataacttcataaatgtatctaaaactaagtgaatag |
1133894 |
T |
|
| Q |
215 |
tgttatagacacatttgataaatttagataaagagaatgttctttttaagaactcgtaaatagcctaagaatcaattaattagagtgatcaatctcatcg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1133893 |
tgttatagacacatttgataaatttagataaagagaatgttctttttaagaacccgtaaatagcctaagaatcaattaattagagtgatcaatctcatcg |
1133794 |
T |
|
| Q |
315 |
tctattaacaatacatcaacttaagtcaaacaattttttgtatgaaccaatcaaacacatgaattgttgacatccggatgatccaaatttaaaagttaga |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1133793 |
tctattaacaatacatcaacttaagtcaaacaaattttcgtatgaaccaatcaaatacatgaattgttgacatccggatgatccaaatttaaaagttaga |
1133694 |
T |
|
| Q |
415 |
aaggaacatgctatt |
429 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1133693 |
aaggaacatgctatt |
1133679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University