View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11203_low_1 (Length: 570)
Name: NF11203_low_1
Description: NF11203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11203_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 4179047 - 4179607
Alignment:
| Q |
1 |
tgtaatgtaattttttcttcttataaatacttcccctgcagattgattaacttaatggatcatgtgcattgcaatgttggctcccaaattgtagctgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4179047 |
tgtaatgtaattttttcttcttataaatacttcccctgcagattgattaacttaatggatcatgtgcattgcaatgttggctcccaaattgtagctgtga |
4179146 |
T |
|
| Q |
101 |
caagtgtgtcaccagctaaaataaccgaaccacgacaagtttgtcaaattctgttcaatgatgaaacaaagaggacaattgagggatgctaccaaatggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4179147 |
caagtgtgtcaccagctaaaataaccgaaccacgacaagtttgtcaaattctattcaatgatgaaacaaagaggacaattgagggatgctaccaaatggt |
4179246 |
T |
|
| Q |
201 |
attgtactatgagaaggttgaagaggaggatcatgattggtccttaactggttggattgtggaatcacttgctagggccttattggatcatcctctacta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4179247 |
attgtactatgagaaggttgaagaggaggatcatgattggtccttaactggttggattgtggaatcacttgctagggccttattggatcatcctctactg |
4179346 |
T |
|
| Q |
301 |
gctggtcgagtccaaaaaagggacataacaggattggaaattgtgtctaatgattctggaattcgactattagaggctcattaccctacaagcttatctg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4179347 |
gctggtcgagtccaaaaaagggacataacaggattggaaattgtgtctaatgattctggaattcgactcttagaggctcattaccctacaagcttatctg |
4179446 |
T |
|
| Q |
401 |
agttccttgagtcgaataaaaatgaacacgatgatgatcatgaggctcaccttgttttctggaatgaaattgatggccaatttcctctgttctctcccct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4179447 |
agttccttgagtcgaataaaaatgaacacgatgatgatcatgaggctcgccttgttttctggaatgaaattgatggccaatttcctctgttctctcccct |
4179546 |
T |
|
| Q |
501 |
cttttatgttcaggcaaatatattcacatatttattttatttaatttttggtaaatgatgt |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4179547 |
cttttatgttcaggcaaatatattcacatatttattttatttaatttttggtaaatgatgt |
4179607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 4173635 - 4173699
Alignment:
| Q |
24 |
taaatacttcccctgcagattgattaacttaatggatcatgtgcattgcaatgttggctcccaaa |
88 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4173635 |
taaatacttcccctgcagattgagtaatttaatggatcatgtgcattgcaatgttggctcccaaa |
4173699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University