View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11203_low_14 (Length: 241)
Name: NF11203_low_14
Description: NF11203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11203_low_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 27670465 - 27670693
Alignment:
| Q |
17 |
atttatatggcataatttttgtttgtggagcaattgtgccggagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaactcgactattc |
116 |
Q |
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| T |
27670465 |
atttatatggcatattttttgtttgtggagcaattgtgtcggagcttacacgttttaaatgtgtaggagtgggttgtcagaaattcgaactcgactattt |
27670564 |
T |
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| Q |
117 |
catatattatacattgttactaccaacta----aagcccagagattaagagattaattatatgacttttatttcacaaaaattctaacacttgctaaatt |
212 |
Q |
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| T |
27670565 |
catatattatacattgttactaccaactaacttaagcccagagattaagagattaattatatgacttttatttcacaaaaattctaacacttgctaaatt |
27670664 |
T |
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| Q |
213 |
tagatatgttttatctaactaaaatgtgc |
241 |
Q |
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| T |
27670665 |
tacatatgttttatctaactaaaatgtgc |
27670693 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 1368153 - 1368202
Alignment:
| Q |
57 |
ggagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
106 |
Q |
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| T |
1368153 |
ggagctcacacattttaaatgtggagaagtggggtgtctggagtttgaac |
1368202 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 33810744 - 33810695
Alignment:
| Q |
57 |
ggagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
106 |
Q |
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| T |
33810744 |
ggagctcacacattttaaatgtggagaagtggggtgtccggggtttgaac |
33810695 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 33372968 - 33373001
Alignment:
| Q |
57 |
ggagcttacacattttaaatgtgtagaagtgggt |
90 |
Q |
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| T |
33372968 |
ggagcttacacattttaaatgtggagaagtgggt |
33373001 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 14795215 - 14795166
Alignment:
| Q |
57 |
ggagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
106 |
Q |
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| T |
14795215 |
ggagctcacacattttaaatgtggagaagtggggtgtccggggtttgaac |
14795166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 46767447 - 46767398
Alignment:
| Q |
57 |
ggagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
106 |
Q |
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| T |
46767447 |
ggagctcacacattttaaatgtggagaagtgggatgtccggggtttgaac |
46767398 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 18254693 - 18254644
Alignment:
| Q |
57 |
ggagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
106 |
Q |
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| T |
18254693 |
ggagctcacacattttaaatgtgaagaagtggggtgtctggagttcgaac |
18254644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 44898449 - 44898497
Alignment:
| Q |
58 |
gagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
106 |
Q |
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| T |
44898449 |
gagctcacacattttaaatgtggagaagtggggtgtccggagttcgaac |
44898497 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 624583 - 624535
Alignment:
| Q |
58 |
gagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
106 |
Q |
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| T |
624583 |
gagctcacacattttaaatgtggagaagtggggtgtcaggggttcgaac |
624535 |
T |
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