View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11203_low_2 (Length: 474)
Name: NF11203_low_2
Description: NF11203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11203_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 39553996 - 39554453
Alignment:
| Q |
1 |
agaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttcatccaagttgcctgcatagtaacgatgataattaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39553996 |
agaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttcatccaagttgcctgcatagtaacaatgataattaaaaca |
39554095 |
T |
|
| Q |
101 |
ctataaataatactaataaatttgtagacatgttgcattgatttttaaatgaataatattttacctgaacagcaagcacaccatgtttcttctttggaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39554096 |
ctataaataatactaataaatttgtagacatgttgcattgatttttaaatgaataatattttacctgaacagcaagcacaccatgtttcttctttggaac |
39554195 |
T |
|
| Q |
201 |
aagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccactccacgattgttgcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39554196 |
aagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccactccacgattgttgcaa |
39554295 |
T |
|
| Q |
301 |
agtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaacaagagcctcagttaaagaatttttcaaacatcccacaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39554296 |
agtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaacaagagcctcagttaaagaatttttcaaacatcccacaa |
39554395 |
T |
|
| Q |
401 |
tgctatggtgggtgccagtagtaattataggatttttgtaacagaagaacacaccaac |
458 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39554396 |
tgctatggtgggtggcagtagtaattataggatttttgtaacagaagaacacaccaac |
39554453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 163 - 458
Target Start/End: Original strand, 39544844 - 39545139
Alignment:
| Q |
163 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
262 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39544844 |
acctgagcagcaagcacaccatgtttcttctttggaacaagcttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
39544943 |
T |
|
| Q |
263 |
caaaagcttcaacaaaatccactccacgattgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaac |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39544944 |
caaaagcttcaacaaaatccactccacgattgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaac |
39545043 |
T |
|
| Q |
363 |
aagagcctcagttaaagaatttttcaaacatcccacaatgctatggtgggtgccagtagtaattataggatttttgtaacagaagaacacaccaac |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39545044 |
aagagcctcagttaaagaatttttcaaacatcccacaatgctatggtgggtggcagtagtaattataggatttttgtaacagaagaacacaccaac |
39545139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 163 - 457
Target Start/End: Original strand, 39587275 - 39587572
Alignment:
| Q |
163 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
262 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||| ||||| |||||||||| ||||||||| ||||||||||||| |
|
|
| T |
39587275 |
acctgaacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatcag |
39587374 |
T |
|
| Q |
263 |
caaaagcttcaacaaaatccactccacgattgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaac |
362 |
Q |
| |
|
||| |||||||||||||||||| ||||| || |||||||||| |||||||||||||||||||||||| | || |||||||||||| | || |||||||| |
|
|
| T |
39587375 |
caacagcttcaacaaaatccacaccacggttattgcaaagtagctcaggttcacccatggagttagtaaccatttcaccagcaaatacgtagtaagaaac |
39587474 |
T |
|
| Q |
363 |
aagagcctcagttaaagaatttttcaaacatcccacaa---tgctatggtgggtgccagtagtaattataggatttttgtaacagaagaacacaccaa |
457 |
Q |
| |
|
|||||| |||| ||| ||||||||||| || ||||||| || ||| | ||||||| ||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
39587475 |
aagagcttcagctaaggaatttttcaagcaccccacaatagtgttattggtggtgccaatagtaatcataggatttttgtagcaaaagaacacaccaa |
39587572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 39543977 - 39544078
Alignment:
| Q |
1 |
agaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttcatccaagttgcctgcatagtaacgatgataattaaaaca |
100 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| |||| ||||||||| |
|
|
| T |
39543977 |
agaatatgcgtccgctatacgatggtcaaaagtgcaagccactactaatccaccacatttcatccatgttgtctgcatagtaacaatgacgattaaaaca |
39544076 |
T |
|
| Q |
101 |
ct |
102 |
Q |
| |
|
|| |
|
|
| T |
39544077 |
ct |
39544078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 39587106 - 39587182
Alignment:
| Q |
1 |
agaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttcatccaagttgcctgca |
77 |
Q |
| |
|
||||||||| || ||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39587106 |
agaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatttcatccaagttgcctgca |
39587182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 175 - 353
Target Start/End: Original strand, 17507043 - 17507221
Alignment:
| Q |
175 |
agcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaa |
274 |
Q |
| |
|
||||| ||||| |||||||| ||||||| || |||||||||| |||||| || ||||| |||||||| |||| | ||||||||||||| |||||||| |
|
|
| T |
17507043 |
agcacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaattgaggcattgaagttcaacatcagcaacagcttcaa |
17507142 |
T |
|
| Q |
275 |
caaaatccactccacgattgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcata |
353 |
Q |
| |
|
||||||| || |||||||| || ||||| | |||||||||||||| || || | || |||||||| ||||||||||| |
|
|
| T |
17507143 |
caaaatcaacaccacgattattacaaagaagctcaggttcacccacagaattggacacaacttcacctgcaaaggcata |
17507221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 319
Target Start/End: Original strand, 17484768 - 17484912
Alignment:
| Q |
175 |
agcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaa |
274 |
Q |
| |
|
||||| ||||| |||||||| ||||||| || |||||||||| |||||| || ||||| |||||||| |||| | |||||||||||||| |||||||| |
|
|
| T |
17484768 |
agcacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaattgaggcattgaagctcaacatcagcaacagcttcaa |
17484867 |
T |
|
| Q |
275 |
caaaatccactccacgattgttgcaaagtaactcaggttcaccca |
319 |
Q |
| |
|
||||||| || ||||| || || ||||| | |||||||||||||| |
|
|
| T |
17484868 |
caaaatcaacaccacggttattacaaagaatctcaggttcaccca |
17484912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University