View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11203_low_5 (Length: 430)
Name: NF11203_low_5
Description: NF11203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11203_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 37635883 - 37635488
Alignment:
| Q |
18 |
ccttatgcactaaaaggaaccaaaaaa-cgaaaagaaaccaacagagattgcagaatttaaaaacccaactaggtatagaactatagatgtcaaggtaaa |
116 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37635883 |
ccttatgcactaaaaggaaccaaaaaaacgaaaagaaaccaacagagattgcagaatttaaaaacccaactacgtatagaactatagatgtcaaggtaaa |
37635784 |
T |
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| Q |
117 |
gaaaattaagaagtaaaggtacttcttcctgcagagatctttagattacaattttatatatttgattgtatctttagatcttttgagtcaatggggtacc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37635783 |
gaaaattaagaagtaaaggtacttcttcctgcagagatctttagattacaattttatatatttgattgtatctttagatcttttgagtcaatggggtgcc |
37635684 |
T |
|
| Q |
217 |
catatattaatatcttatttttgaataatcagattgatgattgtaattaaaatttgggagaaaattttctctgttttatttagagtatcaatttgcttgt |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37635683 |
catatattaatatcttatttttcaataatcagattgatgattgtaattaaaatttgggagaaaattttctgtgttttatttagagtatcaatttgcttgt |
37635584 |
T |
|
| Q |
317 |
gatgctcaaatctgacttatcaactgagaagccaatatcaggcagatcatagtatcataccaaaattattgctccacgaaattaaccgggttgcagtcgt |
416 |
Q |
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| T |
37635583 |
gatgctcaaatctgacttatcaactgagaagccaatatcaggcagat--------cataccaaaattattgctccacgaaattaaccgggttgcagtcgt |
37635492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 37809713 - 37809833
Alignment:
| Q |
18 |
ccttatgcactaaaaggaaccaaaaaacgaaaagaaaccaacagagattgcagaatttaaaaacccaactaggtata--gaactatagatgtcaaggtaa |
115 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| |||| ||| ||||||||| ||||||| |
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| T |
37809713 |
ccttatgcactaaaaggaaccaaaat--gaaaagaaaccaacaacgattgcaaaatttaaaaaccaaactacatatatagaattatagatgttaaggtaa |
37809810 |
T |
|
| Q |
116 |
agaaaattaagaagtaaaggtac |
138 |
Q |
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| T |
37809811 |
agaaaattaagaagtaaaggtac |
37809833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 37646265 - 37646165
Alignment:
| Q |
40 |
aaaaacgaaaagaaaccaacagagattgcagaatttaaaaacccaactaggtata--gaactatagatgtcaaggtaaagaaaattaagaagtaaaggta |
137 |
Q |
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| T |
37646265 |
aaaaacgaaaagaaaccaacaaggattgcagaatttaaaaaccaaactacatatacagaattatagatgttaaggtaaagaaaattaagaagtaaaggta |
37646166 |
T |
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| Q |
138 |
c |
138 |
Q |
| |
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| |
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|
| T |
37646165 |
c |
37646165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 37814578 - 37814678
Alignment:
| Q |
40 |
aaaaacgaaaagaaaccaacagagattgcagaatttaaaaacccaactaggtat--agaactatagatgtcaaggtaaagaaaattaagaagtaaaggta |
137 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
37814578 |
aaaaacgaaaagaaaccaacaaggattgcagaatttaaaaaccaaactacatatacagaattatagatgttaaggtaaagaaaattaagaagtaaaggta |
37814677 |
T |
|
| Q |
138 |
c |
138 |
Q |
| |
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| |
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| T |
37814678 |
c |
37814678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 37814913 - 37814993
Alignment:
| Q |
162 |
ttacaattttatatatttgattgtatctttagatcttttgagtcaatggggta----cccatatattaatatcttattttt |
238 |
Q |
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| T |
37814913 |
ttacaaatttatatatttgattgtatctttagatctttagagtcaatggggtaagatcccatatattaatatctttttttt |
37814993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 37645930 - 37645878
Alignment:
| Q |
162 |
ttacaattttatatatttgattgtatctttagatcttttgagtcaatggggta |
214 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37645930 |
ttacaaatttatatatttgattgtatctttagatctttagagtcaatggggta |
37645878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 37645841 - 37645780
Alignment:
| Q |
264 |
taaaatttgggagaaaattttctctgttttatttagagtatcaatttgcttgtgatgctcaa |
325 |
Q |
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||||||||||||||| ||||||| ||||| || |||||||| ||||| ||||| ||||||| |
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| T |
37645841 |
taaaatttgggagaagattttctttgtttctttgagagtatcgatttgtttgtgttgctcaa |
37645780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 325
Target Start/End: Original strand, 37815003 - 37815068
Alignment:
| Q |
260 |
taattaaaatttgggagaaaattttctctgttttatttagagtatcaatttgcttgtgatgctcaa |
325 |
Q |
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||| ||||||||||||||| ||||||| ||||| || |||||||| ||||| ||||| ||||||| |
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| T |
37815003 |
taaataaaatttgggagaagattttctttgtttctttgagagtatcgatttgtttgtgttgctcaa |
37815068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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