View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11203_low_6 (Length: 342)

Name: NF11203_low_6
Description: NF11203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11203_low_6
NF11203_low_6
[»] chr6 (1 HSPs)
chr6 (1-287)||(1134150-1134439)
[»] chr2 (15 HSPs)
chr2 (7-282)||(28167096-28167375)
chr2 (186-260)||(30545678-30545752)
chr2 (7-82)||(30547810-30547885)
chr2 (7-133)||(44904691-44904823)
chr2 (7-282)||(28165672-28165949)
chr2 (180-271)||(44906077-44906169)
chr2 (7-82)||(44905941-44906017)
chr2 (17-96)||(5696154-5696234)
chr2 (18-82)||(31559312-31559376)
chr2 (7-100)||(5694816-5694911)
chr2 (186-236)||(44904592-44904642)
chr2 (202-282)||(5696333-5696414)
chr2 (211-282)||(3751374-3751446)
chr2 (17-82)||(28563724-28563793)
chr2 (17-49)||(30545994-30546026)
[»] chr1 (14 HSPs)
chr1 (7-282)||(13222928-13223204)
chr1 (7-123)||(13229040-13229160)
chr1 (18-82)||(9419575-9419639)
chr1 (18-112)||(12097714-12097809)
chr1 (25-133)||(40767784-40767896)
chr1 (18-151)||(12096018-12096153)
chr1 (209-259)||(43882092-43882142)
chr1 (17-82)||(33753855-33753922)
chr1 (186-261)||(40767650-40767726)
chr1 (190-236)||(46605874-46605920)
chr1 (210-258)||(28360807-28360856)
chr1 (18-100)||(28253388-28253472)
chr1 (18-82)||(35381595-35381659)
chr1 (17-96)||(43882248-43882328)
[»] chr4 (7 HSPs)
chr4 (7-283)||(34539570-34539844)
chr4 (19-282)||(11148364-11148625)
chr4 (7-272)||(34538150-34538419)
chr4 (17-96)||(2671736-2671816)
chr4 (186-242)||(41246502-41246558)
chr4 (171-259)||(2671578-2671668)
chr4 (17-96)||(20946055-20946135)
[»] chr3 (16 HSPs)
chr3 (7-282)||(3149276-3149550)
chr3 (18-133)||(27662394-27662510)
chr3 (17-123)||(26537583-26537690)
chr3 (180-236)||(27661156-27661212)
chr3 (18-100)||(13645043-13645126)
chr3 (18-96)||(39870649-39870728)
chr3 (17-96)||(1677177-1677257)
chr3 (14-116)||(27661303-27661407)
chr3 (7-133)||(3149788-3149918)
chr3 (186-236)||(27662558-27662608)
chr3 (186-282)||(3149968-3150064)
chr3 (18-86)||(33552819-33552887)
chr3 (186-236)||(34595725-34595775)
chr3 (210-282)||(26537428-26537501)
chr3 (37-96)||(34594455-34594515)
chr3 (202-259)||(55196611-55196670)
[»] chr7 (9 HSPs)
chr7 (7-282)||(38758089-38758362)
chr7 (12-100)||(19639747-19639836)
chr7 (7-100)||(5975429-5975523)
chr7 (209-282)||(38756669-38756742)
chr7 (17-100)||(5974344-5974428)
chr7 (17-100)||(27160506-27160593)
chr7 (22-123)||(38756833-38756938)
chr7 (19-133)||(30045945-30046061)
chr7 (186-272)||(30045812-30045899)
[»] chr5 (5 HSPs)
chr5 (7-147)||(33489672-33489814)
chr5 (187-282)||(6535591-6535687)
chr5 (188-273)||(33489849-33489935)
chr5 (17-82)||(35931119-35931186)
chr5 (17-100)||(35929726-35929814)
[»] chr8 (2 HSPs)
chr8 (7-82)||(7274426-7274501)
chr8 (209-273)||(25562756-25562821)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 1134439 - 1134150
Alignment:
Q  1 aagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttgatttagtccctctactaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1134439 aagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttgatttagtccctctactaa 1134340  T
Q  101 gttcagttgtcatctcatcaagttcc-----atgtatgtgtcgttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttc 195  Q
    || |||||||||||||||||||||||     |||||||||||||||||||||||||        ||||||||||||||||||| |||| |||||||||||    
T  1134339 gtccagttgtcatctcatcaagttccatgttatgtatgtgtcgttagccagctatgtttttt--tttctttcatagaaacggatggcagagaccaatttc 1134242  T
Q  196 aaaagattaagtgaatacaagggttgtttcgcaacaaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaacctttaagcc 287  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  1134241 aaaagattaagtgaatacaagggttgtttcgcaacataaaagatacgaagactaaaataaaaaacgtgttaacttacatgaacctttaagcc 1134150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 28167096 - 28167375
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaattgatgattatgttttct---aattttgtccctatgtaaatatgcgtttttgattt-agtccctctactaagt 102  Q
    |||||||||| ||||||||| ||||| |||||||||||||||| |   ||||| ||||||||||||| ||||||||||||||| |||||||||||||||     
T  28167096 gaaagaatgaattttaaattccaaaatttgatgattatgtttttttttaatttcgtccctatgtaaaaatgcgtttttgattttagtccctctactaaga 28167195  T
Q  103 tcagttgtcatctcatcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaaga 201  Q
     |||||| || ||||||| || |||  |||| ||| |||| ||||| |||        ||| ||| |   |||  || |||| ||||||||||||||||     
T  28167196 ccagttgccaactcatcatgtgccacatatgcgtctgttatccagcaatgcgtttt--ttttttttacgaaaatagacggcagagaccaatttcaaaagg 28167293  T
Q  202 ttaagtgaatacaagggttgtttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 282  Q
    |||||| |||||||||||||||||||||| ||||||||||||| |||||||| |||||||| | ||||||||| | ||||||    
T  28167294 ttaagtaaatacaagggttgtttcgcaacaaaaaaagatacaaggactaaaaccaaaaacgcgctaacttacagggaccttt 28167375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 30545752 - 30545678
Alignment:
Q  186 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaagatacaaagactaaaatcaaaaac 260  Q
    |||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||| ||||||||| |||||||    
T  30545752 gaccaatttcaaaatattaagtaaatacaagagttgttttgcaacaaaaaagatacagagactaaaaccaaaaac 30545678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 30547810 - 30547885
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttg 82  Q
    ||||||||||||||||||||| |||| |||||||||||||||| |||||| |||| ||||||||||| | ||||||    
T  30547810 gaaagaatgagttttaaattttaaaatttgatgattatgttttttaatttcgtccttatgtaaatatacatttttg 30547885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 44904823 - 44904691
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaatt-gatgattatgttttct---aatttt-gtccctatgtaaatatgcgtttttgattt-agtccctctactaa 100  Q
    |||||| || |||| |||||||||||||| |||||||| ||||| |   |||||  ||||||||||||| ||| |||||| |||| ||||||||||||||    
T  44904823 gaaagattgggtttaaaatttcaaaaatttgatgattacgtttttttttaatttcagtccctatgtaaaaatgtgtttttcattttagtccctctactaa 44904724  T
Q  101 gttcagttgtcatctcatcaagttccatgtatg 133  Q
    |  |||||||||||||||||||| |||||||||    
T  44904723 gagcagttgtcatctcatcaagtgccatgtatg 44904691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 28165949 - 28165672
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaatt-gatgattatgttttctaatttt--gtccctatgtaaatatgcgttttt-gatttagtccctctactaagt 102  Q
    |||||| || |||| |||||||||||||| |||||||| ||||| | | |||  |||| |||||||| ||||| |||| | ||||||||||||||||||     
T  28165949 gaaagattgggtttaaaatttcaaaaatttgatgattacgtttttttaatttcagtccttatgtaaaaatgcgcttttcgttttagtccctctactaaga 28165850  T
Q  103 tcagttgtcatctcatcaagttccatgtatgtg-tcgttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaaga 201  Q
     |||||  |||||||||||||  || ||||| |  ||||||||||| |||        ||| ||| |  ||||| || | | | ||||||||||||||      
T  28165849 gcagtttccatctcatcaagtgtcacgtatgcgaccgttagccagcaatgctt-----ttttttttacggaaactgacgacgaggaccaatttcaaaaag 28165755  T
Q  202 ttaagtgaatacaagggttg-tttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 282  Q
    |||||  ||||||||||||| ||||||||| ||||||||||||  |||||||| |||||||| | ||||||||||| ||||||    
T  28165754 ttaagaaaatacaagggttgttttcgcaacaaaaaaagatacagggactaaaaccaaaaacgcgctaacttacatggaccttt 28165672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 44906077 - 44906169
Alignment:
Q  180 ggcaaagaccaatttcaaaagattaagtgaatacaagggttgtttcgcaa-caaaaaagatacaaagactaaaatcaaaaacgtgttaactta 271  Q
    |||| |||||||||||||||| |||||| ||||||| | |||||||||||  ||||||||||||| || ||||| |||||||| | |||||||    
T  44906077 ggcagagaccaatttcaaaaggttaagtaaatacaaagattgtttcgcaataaaaaaagatacaaggattaaaaccaaaaacgcgctaactta 44906169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 44905941 - 44906017
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaattgatgattatg-ttttctaattttgtccctatgtaaatatgcgtttttg 82  Q
    |||||||| | ||||||||| ||||| |||||||||||| |||| |||||| ||||||||||||| |||| ||||||    
T  44905941 gaaagaattaattttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgcatttttg 44906017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 5696154 - 5696234
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctcta 96  Q
    |||||||| ||||||  |||||||||||||||| || ||| |||||| ||||||| | ||||||| | |||||||||||||    
T  5696154 gttttaaaattcaaattttgatgattatgttttttattttcgtccctgtgtaaatttacgtttttggttttagtccctcta 5696234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 31559312 - 31559376
Alignment:
Q  18 ttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttg 82  Q
    ||||||||||||||| | |||||||| || || ||||||  ||||||||||||||| ||||||||    
T  31559312 ttttaaatttcaaaattcgatgattacgtgttttaatttcatccctatgtaaatattcgtttttg 31559376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 5694911 - 5694816
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaattgatgattatg-ttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctctactaa 100  Q
    |||||| ||| ||||||| || ||||||||||||||||| |||| ||| || |||||||||| ||  ||||||||| | |||||||||| ||||||    
T  5694911 gaaagactgatttttaaaatttaaaaattgatgattatgtttttttaaattagtccctatgttaaattgcgtttttggttttagtccctatactaa 5694816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 44904642 - 44904592
Alignment:
Q  186 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaa 236  Q
    ||||||||||||||  |||||  ||||||||||||||||||| ||||||||    
T  44904642 gaccaatttcaaaaagttaagaaaatacaagggttgtttcgcgacaaaaaa 44904592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 5696333 - 5696414
Alignment:
Q  202 ttaagtgaatacaagggttgtttcgcaacaaaa-aagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 282  Q
    |||||| ||||||  ||||||||| |||||||| ||||||||||||||||||  ||||| | |  |||||||||| ||||||    
T  5696333 ttaagtaaatacagaggttgtttcacaacaaaaaaagatacaaagactaaaactaaaaatgcgcaaacttacatggaccttt 5696414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 3751374 - 3751446
Alignment:
Q  211 tacaagggttgtttcgcaaca-aaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 282  Q
    ||||||||||||||||||||| |||||||||| || |||||||  ||||| | | ||| ||||||| ||||||    
T  3751374 tacaagggttgtttcgcaacagaaaaagataccaatactaaaacaaaaaatgcgctaatttacatggaccttt 3751446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 28563724 - 28563793
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgttttct----aattttgtccctatgtaaatatgcgtttttg 82  Q
    |||||||| |||||||||||| ||||||||||| |    ||||| ||||||||||||| |||| ||||||    
T  28563724 gttttaaaattcaaaaattgaagattatgtttttttttaaatttagtccctatgtaaaaatgcatttttg 28563793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 30546026 - 30545994
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgtttt 49  Q
    |||||||||||||||| ||||||||||||||||    
T  30546026 gttttaaatttcaaaatttgatgattatgtttt 30545994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 13223204 - 13222928
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaattgatgattatgttttct-aattttgtccctatgtaaatatgcgtttttgattt-agtccctctactaagttc 104  Q
    |||||||||| ||||||||| ||||| |||||||||||||||| | ||||| ||||||||||||| ||||||||||| ||| ||||||||||||||        
T  13223204 gaaagaatgaattttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgcgtttttggttttagtccctctactaacact 13223105  T
Q  105 agttgtcatctcatcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaagatt 203  Q
    ||||| || |||||||  | ||| ||||| ||| |||||||| | |||        ||| ||| |  ||||  || ||||  ||||||||||||||| ||    
T  13223104 agttgccaactcatcatatgccacgtatgcgtctgttagccaacaatgcgtttt--ttttttttacggaaatagacggcagggaccaatttcaaaaggtt 13223007  T
Q  204 aagtgaatacaagggttgtttcgcaacaaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 282  Q
    || | ||||||||||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||| | ||||||    
T  13223006 aaataaatacaagggttgtttcgcaacaaaaaagatacacggactaaaaccaaaaacgtgctaacttacagggaccttt 13222928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 13229040 - 13229160
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaa-ttgatgattatgttttct-aatttt-gtccctatgtaaatatgcgttttt-gatttagtccctctactaagt 102  Q
    |||||| || |||| |||||||||||| |||||||||| ||||| | |||||| ||||||||||||| ||| |||||| | ||||||||||||||||||     
T  13229040 gaaagattgggtttaaaatttcaaaaaattgatgattacgtttttttaattttagtccctatgtaaaaatgtgtttttcgttttagtccctctactaaga 13229139  T
Q  103 tcagttgtcatctcatcaagt 123  Q
     ||||||||||||||||||||    
T  13229140 gcagttgtcatctcatcaagt 13229160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 9419575 - 9419639
Alignment:
Q  18 ttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttg 82  Q
    ||||||||||||||| |||||||||| ||||| ||||||  ||||||||||||||| ||||||||    
T  9419575 ttttaaatttcaaaatttgatgattacgttttttaatttcatccctatgtaaatattcgtttttg 9419639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 12097714 - 12097809
Alignment:
Q  18 ttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctctactaagttcagttgtca 112  Q
    ||||||| ||||||||||||| |||| ||||| ||||||  ||||||  |||| |||||||||| | ||||||||||||||||||  |||||||||    
T  12097714 ttttaaaattcaaaaattgataattaagttttttaatttcatccctacctaaaaatgcgtttttggttttagtccctctactaagaccagttgtca 12097809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 40767896 - 40767784
Alignment:
Q  25 tttcaaaaatt-gatgattatgttttctaatttt--gtccctatgtaaatatgcgttttt-gatttagtccctctactaagttcagttgtcatctcatca 120  Q
    ||||||||||| |||||||| ||||| | | |||  |||| |||||||| |||||||||| | ||||||||||||||||||  |||||| ||||||||||    
T  40767896 tttcaaaaatttgatgattacgtttttttagtttcagtccttatgtaaaaatgcgtttttcgttttagtccctctactaagagcagttgccatctcatca 40767797  T
Q  121 agttccatgtatg 133  Q
    ||| ||| |||||    
T  40767796 agtgccacgtatg 40767784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 12096153 - 12096018
Alignment:
Q  18 ttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctctactaagttcagttgtcatctc 116  Q
    ||||||| ||||||||||||| |||| ||||| ||||||  ||||  |||||| |||||||||| | ||||||| ||||||||||| || ||| || |||    
T  12096153 ttttaaaattcaaaaattgataattaagttttttaatttcatccccgtgtaaaaatgcgtttttggttttagtcactctactaagtccaattgccaactc 12096054  T
Q  117 atcaagttccatgtatgtgt-cgttagccagctatg 151  Q
    | ||| | ||| ||  |||| |||||||||||||||    
T  12096053 accaaatgccacgttggtgtccgttagccagctatg 12096018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 43882142 - 43882092
Alignment:
Q  209 aatacaagggttgtttcgcaacaaaaaagatacaaagactaaaatcaaaaa 259  Q
    |||||| |||||||||||||||||||||||||||  |||||||| ||||||    
T  43882142 aatacaggggttgtttcgcaacaaaaaagatacagggactaaaaccaaaaa 43882092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 33753922 - 33753855
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgttttc--taattttgtccctatgtaaatatgcgtttttg 82  Q
    |||||||| |||||||||||| ||||| |||||   |||||| ||||||||||||| |||||||||||    
T  33753922 gttttaaaattcaaaaattgaagattacgtttttcttaatttagtccctatgtaaaaatgcgtttttg 33753855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 40767726 - 40767650
Alignment:
Q  186 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaa-aaaagatacaaagactaaaatcaaaaacg 261  Q
    ||||||||||||||  |||||  ||||||| | |||||||||||||| ||||||||||  |||||||| ||||||||    
T  40767726 gaccaatttcaaaaagttaagaaaatacaaagattgtttcgcaacaaaaaaagatacagggactaaaaccaaaaacg 40767650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 46605874 - 46605920
Alignment:
Q  190 aatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaa 236  Q
    ||||||||||  |||||  ||||||||||||||||||||||||||||    
T  46605874 aatttcaaaaagttaagaaaatacaagggttgtttcgcaacaaaaaa 46605920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 28360856 - 28360807
Alignment:
Q  210 atacaagggttgtttcgcaacaa-aaaagatacaaagactaaaatcaaaa 258  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||| |||||    
T  28360856 atacaagagttgtttcgcaacaaaaaaagatacaaggactaaaaccaaaa 28360807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 28253388 - 28253472
Alignment:
Q  18 ttttaaatttcaaaaattgatgattatgttttct-aattttgtccctatgtaaatatgcgtttttga-tttagtccctctactaa 100  Q
    ||||||| ||||||| |||||| |||  |||| | |||||  ||||||||||||| | ||||||||| |||||||||||||||||    
T  28253388 ttttaaaattcaaaatttgatgtttacctttttttaatttcatccctatgtaaatttacgtttttgattttagtccctctactaa 28253472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 35381659 - 35381595
Alignment:
Q  18 ttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttg 82  Q
    ||||||| ||||||||||||||||||  |||| |||||   |||||||||||| || ||||||||    
T  35381659 ttttaaaattcaaaaattgatgattacattttttaattacatccctatgtaaaaatacgtttttg 35381595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 43882328 - 43882248
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctcta 96  Q
    |||||||| ||||||  |||||||||||||||| || ||  ||| |||||||||| | ||||||| | |||||||||||||    
T  43882328 gttttaaaattcaaattttgatgattatgttttttatttccgtctctatgtaaattttcgtttttggttttagtccctcta 43882248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 34539570 - 34539844
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaattgatgattatgttttct--aattttgtccctatgtaaatatgcgtttttgatttagtccctctactaagttc 104  Q
    |||||||||| ||||||||| ||||| |||||||||||||||| |  ||||| ||||||||||||| |||| |||||| ||||||||||||||||||  |    
T  34539570 gaaagaatgaattttaaattccaaaatttgatgattatgttttttttaatttcgtccctatgtaaaaatgcttttttgttttagtccctctactaagacc 34539669  T
Q  105 agttgtcatctcatcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaagatt 203  Q
    ||||| || ||||||| ||  || ||||| ||| ||||| || | |||        ||| ||| | |||||  || || |  ||||||||||||||| ||    
T  34539670 agttgccaactcatcatgtgtcacgtatgcgtctgttagtcaacaatgcg------tttttttgacagaaatagacggtagggaccaatttcaaaaggtt 34539763  T
Q  204 aagtgaatacaagggttgtttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttta 283  Q
    |||| |||| ||||||||||||||||| |||||||||||| ||| ||||| |||||||| | ||||||||||| |||||||    
T  34539764 aagtaaatataagggttgtttcgcaacaaaaaaagatacagagattaaaaccaaaaacgcgctaacttacatggaccttta 34539844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 11148625 - 11148364
Alignment:
Q  19 tttaaatttcaaaaattgatgattatgttttct-aattttgtccctatgtaaatatgcgtttttgattt-agtccctctactaagttcagttgtcatctc 116  Q
    |||||||| ||||| |||||||||||||||| | ||||| ||||||||||||| ||| ||||||| ||| ||||||||||||||| ||||||| || |||    
T  11148625 tttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctctactaagatcagttgccaactc 11148526  T
Q  117 atcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaagattaagtgaatacaa 215  Q
    |||| || ||| || |||||| |||||||||| |||        ||| ||| |  ||||  || ||||  ||||||||||||||| |||||| |||||||    
T  11148525 atcatgtgccacgtttgtgtctgttagccagcaatgcg------tttttttgacggaaatagacggcagggaccaatttcaaaaggttaagtaaatacaa 11148432  T
Q  216 gggttgtttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 282  Q
    ||||||||||||||| |||||||||| |  |||||||| |||||||| | ||||||||| | ||||||    
T  11148431 gggttgtttcgcaacaaaaaaagatatagcgactaaaaccaaaaacgcgctaacttacagggaccttt 11148364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 34538419 - 34538150
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaatt-gatgattatgttttctaatttt--gtccctatgtaaatatgcgttttt-gatttagtccctctactaagt 102  Q
    |||||| || |||| |||||||||||||| |||||||| ||||| | | |||  ||||||||||||| |||||||||| | ||||||||||||||||||     
T  34538419 gaaagattgggtttaaaatttcaaaaatttgatgattacgtttttttaatttcagtccctatgtaaaaatgcgtttttcgttttagtccctctactaaga 34538320  T
Q  103 tcagttgtcatctcatcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaaga 201  Q
     |||||| ||||||||||||| ||| ||||| | | ||||| || | |||        ||| ||| |  ||||| || ||| | ||||| ||||||||      
T  34538319 gcagttgccatctcatcaagtgccacgtatgcgaccgttagtcaacaatgcttttt--ttttttttacggaaactgacggcgaggaccagtttcaaaaag 34538222  T
Q  202 ttaagtgaatacaagggttgtttcgcaacaa-aaaagatacaaagactaaaatcaaaaacgtgttaacttac 272  Q
    |||||  |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||    
T  34538221 ttaagaaaatacaagggttgtttcgcaacaaaaaaagatacaaggactaaaaccaaaaacgtgctaacttac 34538150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 2671816 - 2671736
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctcta 96  Q
    |||||||| ||||||  |||||||||||||||| || ||| |||||||||||||| ||||||||| | |||||||||||||    
T  2671816 gttttaaaattcaaattttgatgattatgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctcta 2671736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 41246502 - 41246558
Alignment:
Q  186 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaagataca 242  Q
    ||||||||||||||||||| || ||||||| |||||||||| |||||||||||||||    
T  41246502 gaccaatttcaaaagattatgtaaatacaaaggttgtttcgtaacaaaaaagataca 41246558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 2671668 - 2671578
Alignment:
Q  171 gaaacggagggcaaagaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaa--aaaagatacaaagactaaaatcaaaaa 259  Q
    |||||||| ||||  ||| ||| ||||||  |||||| |||||| |||||||||||||||||  ||||||||||  |||||||| ||||||    
T  2671668 gaaacggacggcagggacgaatgtcaaaatgttaagtaaatacaggggttgtttcgcaacaaaaaaaagatacagggactaaaaccaaaaa 2671578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 20946135 - 20946055
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctcta 96  Q
    |||||||| ||||||  ||||||||||| |||| || ||| |||||| ||||||| || |||||| | |||||||||||||    
T  20946135 gttttaaaattcaaattttgatgattatattttttattttcgtccctgtgtaaatttgtgtttttggttttagtccctcta 20946055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 3149550 - 3149276
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaattgatgattatg--ttttctaattttgtccctatgtaaatatgcgt-ttttgatttagtccctctactaagtt 103  Q
    |||||||||| ||||||||| ||||| ||||||||||||  |||| |||||| ||||||||||||| |||||| ||| | ||||||||||||||||||      
T  3149550 gaaagaatgaattttaaattccaaaatttgatgattatgttttttttaatttcgtccctatgtaaaaatgcgtctttggttttagtccctctactaagac 3149451  T
Q  104 cagttgtcatctcatcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaagat 202  Q
    ||| || || ||||||| || |||||||||  || |||||||||| |||        ||| ||| |  ||||  || |||| |||||||||||||||| |    
T  3149450 cagctgccaactcatcatgtgccatgtatgcatctgttagccagcaatgcg------tttttttgacggaaatagacggcagagaccaatttcaaaaggt 3149357  T
Q  203 taagtgaatacaagggttgtttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 282  Q
    ||||| |||||||||||||||||||||| ||||||||||||  |||||||| | |||||  | ||||||||| | ||||||    
T  3149356 taagtaaatacaagggttgtttcgcaacaaaaaaagatacatggactaaaacccaaaactggctaacttacagggaccttt 3149276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 27662394 - 27662510
Alignment:
Q  18 ttttaaatttcaaaaattgatgattatgttttct-aattttgtccctatgtaaatatgcgttttt-gatttagtccctctactaagttcagttgtcatct 115  Q
    ||||||||||||||| ||||| |||||||||| | ||||| |||| | ||||||||||||||||| | ||||||||||||||||||  || ||| |||||    
T  27662394 ttttaaatttcaaaatttgataattatgtttttttaatttcgtcc-tctgtaaatatgcgtttttagttttagtccctctactaagaccaattgccatct 27662492  T
Q  116 catcaagttccatgtatg 133  Q
    |||||||| |||| ||||    
T  27662493 catcaagtaccatctatg 27662510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 26537690 - 26537583
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttga-tttagtccctctactaagttcagttgtcatct 115  Q
    ||||||||||  |||| |||||||||| ||||| ||||||  ||| ||| |||||||| |||||||| |||||||||||||||||   || |||||||||    
T  26537690 gttttaaattgtaaaatttgatgattacgttttttaatttcatccttatttaaatatgtgtttttgattttagtccctctactaacaccaattgtcatct 26537591  T
Q  116 catcaagt 123  Q
    ||||||||    
T  26537590 catcaagt 26537583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 27661212 - 27661156
Alignment:
Q  180 ggcaaagaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaa 236  Q
    |||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  27661212 ggcagagaccaatttcaaaaaattaagtaaatacaaaggttgtttcgcaacaaaaaa 27661156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 13645126 - 13645043
Alignment:
Q  18 ttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctctactaa 100  Q
    ||||| ||||||||  ||||| |||||||||| || ||| |||||||||||||| ||||||||| | |||||||||||||||||    
T  13645126 ttttacatttcaaattttgattattatgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctctactaa 13645043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 39870728 - 39870649
Alignment:
Q  18 ttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttga-tttagtccctcta 96  Q
    ||||||| |||||||||||||||||| ||||| |||||   |||||||||||| || ||||||||| |||||||||||||    
T  39870728 ttttaaaattcaaaaattgatgattacgttttttaattacatccctatgtaaaaatacgtttttgattttagtccctcta 39870649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 1677257 - 1677177
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctcta 96  Q
    |||||||| ||||||  |||||||||| ||||| || ||| |||||||||||||| ||||||||| | |||||||||||||    
T  1677257 gttttaaaattcaaattttgatgattacgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctcta 1677177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 27661407 - 27661303
Alignment:
Q  14 tgagttttaaatttcaaaaattgatgattatgttt-tctaattttgtccctatgtaaatatgcgtt-tttgatttagtccctctactaagttcagttgtc 111  Q
    ||||||||||||||||||| || |||||||  ||| | ||||||   ||||||||||||||| ||| |||| |||||||||||||||||   ||||||||    
T  27661407 tgagttttaaatttcaaaattttatgattacatttctttaatttcacccctatgtaaatatgtgttatttgttttagtccctctactaacaccagttgtc 27661308  T
Q  112 atctc 116  Q
    |||||    
T  27661307 atctc 27661303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 3149788 - 3149918
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaatt-gatgattatgttttctaatttt--gtccctatgtaaatatgcgttttt-gatttagtccctctactaagt 102  Q
    |||||| || |||| |||||| ||||||| |||||||| ||||| | | |||  ||||||||||||| |||||||||| | ||| |||||||||| |||     
T  3149788 gaaagattgggtttaaaattttaaaaatttgatgattacgtttttttaatttcagtccctatgtaaaaatgcgtttttcgtttttgtccctctaccaaga 3149887  T
Q  103 tcagttgtcatctcatcaagttccatgtatg 133  Q
     ||| |||||||||||||||| ||| |||||    
T  3149888 gcagctgtcatctcatcaagtgccacgtatg 3149918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 27662558 - 27662608
Alignment:
Q  186 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaa 236  Q
    ||||| ||||||||| |||||| |||||||||||||||| |||||||||||    
T  27662558 gaccactttcaaaaggttaagtaaatacaagggttgttttgcaacaaaaaa 27662608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 282
Target Start/End: Original strand, 3149968 - 3150064
Alignment:
Q  186 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaaga-tacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 282  Q
    ||||||||||||||  |||||  |||||||||||| || |||||||||||| | ||||  |||||||| |||||||| ||||||||||| | ||||||    
T  3149968 gaccaatttcaaaaagttaagaaaatacaagggttatt-cgcaacaaaaaaaaatacagggactaaaaccaaaaacgcgttaacttacagggaccttt 3150064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 33552819 - 33552887
Alignment:
Q  18 ttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttgattt 86  Q
    |||||||||| |||  |||||| |||||||||  |||||||||||||||||||| ||  ||||||||||    
T  33552819 ttttaaattttaaattttgatgtttatgtttttcaattttgtccctatgtaaatttggatttttgattt 33552887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 34595725 - 34595775
Alignment:
Q  186 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaa 236  Q
    ||||||||||||||| ||||    |||||||||||||||||||||||||||    
T  34595725 gaccaatttcaaaaggttaacaagatacaagggttgtttcgcaacaaaaaa 34595775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 26537501 - 26537428
Alignment:
Q  210 atacaagggttgtttcgcaa-caaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 282  Q
    ||||||||||||||||||||  ||||||||||||   ||||||| |||||||||| || |||| ||| ||||||    
T  26537501 atacaagggttgtttcgcaataaaaaaagatacaggaactaaaaccaaaaacgtgctagcttatatggaccttt 26537428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 34594515 - 34594455
Alignment:
Q  37 atgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctcta 96  Q
    ||||||||||||| ||||||  ||||||||||||| | ||||||| | |||||||||||||    
T  34594515 atgattatgttttttaatttcatccctatgtaaatttccgtttttggttttagtccctcta 34594455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 55196670 - 55196611
Alignment:
Q  202 ttaagtgaatacaagggttgtttcgcaacaa--aaaagatacaaagactaaaatcaaaaa 259  Q
    |||||| |||||| |||||||||||||||||  ||||||||||  |||||||| ||||||    
T  55196670 ttaagtaaatacaggggttgtttcgcaacaaaaaaaagatacatggactaaaaccaaaaa 55196611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 38758089 - 38758362
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaattgatgattatgttttct-aattttgtccctatgtaaatatgcgtttttgattt-agtccctctactaagttc 104  Q
    |||||||||| ||||||||| ||||| |||||||||||||||| | ||||| ||||||||||||| ||| ||||||| ||| |||||||||||||||  |    
T  38758089 gaaagaatgaattttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctctactaagacc 38758188  T
Q  105 agttgtcatctcatcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaagatt 203  Q
    ||||| ||  |||||| || ||| ||||| ||| |||||||| | |||        ||| ||| |  ||||  || || |  ||||||||||||||| ||    
T  38758189 agttgccaattcatcatgtgccacgtatgcgtctgttagccaacaatgca------tttttttgacggaaatagacggtagggaccaatttcaaaaggtt 38758282  T
Q  204 aagtgaatacaagggttgtttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 282  Q
    |||| |||||||||||||||||||||| ||||||||||||  |||||||| |||||||| | ||||||||| | ||||||    
T  38758283 aagtaaatacaagggttgtttcgcaacaaaaaaagatacagggactaaaaccaaaaacgcgctaacttacagggaccttt 38758362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 19639747 - 19639836
Alignment:
Q  12 aatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcg-tttttgatttagtccctctactaa 100  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||  |||||||||||| ||||| |||||| |||| ||||||||||||    
T  19639747 aatgagttttaaatttcaaaatttgatgattacgttttttaatttcatccctatgtaaacatgcgttttttgttttaatccctctactaa 19639836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 5975429 - 5975523
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgc-gtttttgatttagtccctctactaa 100  Q
    ||||||||  ||||||||||| |||  |||||||||||||||| |||||| |||||||||||||| |||  |||||| |||||||||||||||||    
T  5975429 gaaagaatatgttttaaattttaaattttgatgattatgttttttaatttcgtccctatgtaaatttgcattttttgttttagtccctctactaa 5975523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 38756742 - 38756669
Alignment:
Q  209 aatacaagggttgtttcgcaacaaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 282  Q
    |||||||||||| |||||||||||||||||||||  |||||||| |||||||| | ||||||||| | ||||||    
T  38756742 aatacaagggttatttcgcaacaaaaaagatacagggactaaaaccaaaaacgcgctaacttacagggaccttt 38756669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 5974428 - 5974344
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttga-tttagtccctctactaa 100  Q
    |||||||||||||||  |||||||||||||||| ||||||| ||||| ||||||| || |||||| | ||||||| |||||||||    
T  5974428 gttttaaatttcaaactttgatgattatgttttttaattttatccctgtgtaaatttgtgttttttattttagtcgctctactaa 5974344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 27160593 - 27160506
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgtt---ttctaattttgtccctatgtaaatatgcgtttttga-tttagtccctctactaa 100  Q
    |||||||| |||||||||||| ||||| |||   || |||||| ||||||||||||| |||||||||||| |||||||||| ||||||    
T  27160593 gttttaaaattcaaaaattgaagattacgttattttttaatttagtccctatgtaaaaatgcgtttttgattttagtccctatactaa 27160506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 38756938 - 38756833
Alignment:
Q  22 aaatttcaaaaatt-gatgattatgttttct-aatttt-gtccctatgtaaatatgcgttttt-gatttagtccctctactaagttcagttgtcatctca 117  Q
    |||||||||||||| |||||||| ||||| | |||||| ||||||||||||| ||| |||||| | ||||||||||||||||||  ||||||  ||||||    
T  38756938 aaatttcaaaaatttgatgattacgtttttttaattttagtccctatgtaaaaatgtgtttttcgttttagtccctctactaagagcagttgcaatctca 38756839  T
Q  118 tcaagt 123  Q
    ||||||    
T  38756838 tcaagt 38756833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 30046061 - 30045945
Alignment:
Q  19 tttaaatttcaaaaattgatgattatgttttct-aattttgtccctatgtaaatatgcgtttttgattt-agtccctctactaagttcagttgtcatctc 116  Q
    |||||||| ||||| ||||| ||||| |||| | ||||| ||||||||||||| || |||||||| ||| ||||||||||||||| | ||||| || |||    
T  30046061 tttaaattccaaaatttgattattatatttttttaatttcgtccctatgtaaaaatacgtttttggttttagtccctctactaagattagttggcaactc 30045962  T
Q  117 atcaagttccatgtatg 133  Q
    |||| || ||| |||||    
T  30045961 atcatgtgccacgtatg 30045945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 30045899 - 30045812
Alignment:
Q  186 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaa-aaaagatacaaagactaaaatcaaaaacgtgttaacttac 272  Q
    ||||||||||||||| |||| | |||||||| ||| ||||||||||| ||||||||||  |||| |||  ||||||| | ||||||||    
T  30045899 gaccaatttcaaaaggttaaataaatacaagagttatttcgcaacaaaaaaagatacatggacttaaacaaaaaacgcgctaacttac 30045812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 33489672 - 33489814
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttgat-ttagtccctctactaagttca 105  Q
    |||||||||| ||||||||||||||| |||||||||||||||| |||||  ||||||||||||| ||||||||||| | |||||||||||||||||  ||    
T  33489672 gaaagaatgaattttaaatttcaaaatttgatgattatgttttttaattccgtccctatgtaaaaatgcgtttttggtattagtccctctactaagacca 33489771  T
Q  106 gttgtcatctcatcaagttccatgtatgtgt-cgttagccagc 147  Q
    |||| || |||||||||| |||  |||| || |||||||||||    
T  33489772 gttgccaactcatcaagtgccacatatgcgtccgttagccagc 33489814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 6535591 - 6535687
Alignment:
Q  187 accaatttcaaaagattaagtgaatacaagggttgtttcgcaac--aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 282  Q
    |||||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||  ||||||||| ||||||  | ||||||||||| ||||||    
T  6535591 accaatttcaaaaggttaagtaaatacaagggttgtttcgcaacaaaaaaaagatacatggactaaaataaaaaac-cgctaacttacatgtaccttt 6535687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 33489849 - 33489935
Alignment:
Q  188 ccaatttcaaaagattaagtgaatacaagggttgtttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttaca 273  Q
    ||||||| ||||  |||||| |||||| ||||||||||||||| ||||||||||||  ||||||||  ||||||| | |||||||||    
T  33489849 ccaattttaaaaagttaagtaaatacaggggttgtttcgcaacaaaaaaagatacagggactaaaacgaaaaacgcgctaacttaca 33489935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 35931119 - 35931186
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgttttc--taattttgtccctatgtaaatatgcgtttttg 82  Q
    |||||||| |||||||||||| ||||| |||||   |||||| ||||||||||||| |||||||||||    
T  35931119 gttttaaaattcaaaaattgaagattacgtttttcttaatttagtccctatgtaaaaatgcgtttttg 35931186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 35929814 - 35929726
Alignment:
Q  17 gttttaaatttcaaaaattgatgattatgttttct----aattttgtccctatgtaaatatgcgtttttga-tttagtccctctactaa 100  Q
    |||||||| |||||||||||| ||||| ||||| |    ||||| ||| ||||||||| |||||||||||| |||||||||| ||||||    
T  35929814 gttttaaaattcaaaaattgaagattacgttttttttttaatttagtctctatgtaaaaatgcgtttttgattttagtccctatactaa 35929726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 7274426 - 7274501
Alignment:
Q  7 gaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttg 82  Q
    |||| ||| ||||||||| ||||||  |||||||||||||||| || |||  ||||||||||||| ||| ||||||    
T  7274426 gaaataataagttttaaaattcaaattttgatgattatgttttttattttcatccctatgtaaatttgcatttttg 7274501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 25562756 - 25562821
Alignment:
Q  209 aatacaagggttgtttcgcaacaaaaaagat-acaaagactaaaatcaaaaacgtgttaacttaca 273  Q
    ||||||||||||||||||||||||||||  | | |  |||||||||||||||||||  ||||||||    
T  25562756 aatacaagggttgtttcgcaacaaaaaaacttagagggactaaaatcaaaaacgtgcgaacttaca 25562821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University