View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11203_low_9 (Length: 267)

Name: NF11203_low_9
Description: NF11203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11203_low_9
NF11203_low_9
[»] chr1 (3 HSPs)
chr1 (16-267)||(40643590-40643841)
chr1 (43-264)||(40652287-40652508)
chr1 (57-267)||(40642441-40642651)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 40643590 - 40643841
Alignment:
Q  16 caaaaaagacataagtaacaagaacgcttaattactcaccaaacactttatgagagcttcaactttgcccttacatggcccttaaaaatctggaattgtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  40643590 caaaaaagacataagtaacaagaacgcttaattactcaccaaacactttatgagagcttcaactttgcccttacatgacccttagaaatctggaattgtt 40643689  T
Q  116 cagttatgcctaaatgagccatcaaaagccagacatgggtaagcaactcaccaccctggctaagttgcctagcatgatgaagccctctacattgacttgc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40643690 cagttatgcctaaatgagccatcaaaagccagacatgggtaagcaactcaccaccctggctaagttgcctagcatgatgaagccctctacattgacttgc 40643789  T
Q  216 tgcatgacacagcatctctacccaaacatgacttatcatttcccatttctgt 267  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40643790 tgcatgacacagcatctccacccaaacatgacttatcatttcccatttctgt 40643841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 43 - 264
Target Start/End: Original strand, 40652287 - 40652508
Alignment:
Q  43 ttaattactcaccaaacactttatgagagcttcaactttgcccttacatggcccttaaaaatctggaattgttcagttatgcctaaatgagccatcaaaa 142  Q
    |||| ||| ||||||||| ||||||||||||| ||||||||||||||||| || ||| ||||||| |||||||| ||||| |||||||||||||||||||    
T  40652287 ttaactacccaccaaacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaa 40652386  T
Q  143 gccagacatgggtaagcaactcaccaccctggctaagttgcctagcatgatgaagccctctacattgacttgctgcatgacacagcatctctacccaaac 242  Q
    |||||||||||||||||||||||||||| ||| | |||||| ||||||| ||||| |||||||| || ||||| |||||||||| |||||| ||||||||    
T  40652387 gccagacatgggtaagcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctacactggcttgcggcatgacacaacatctccacccaaac 40652486  T
Q  243 atgacttatcatttcccatttc 264  Q
    ||||||||||||||||||||||    
T  40652487 atgacttatcatttcccatttc 40652508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 57 - 267
Target Start/End: Original strand, 40642441 - 40642651
Alignment:
Q  57 aacactttatgagagcttcaactttgcccttacatggcccttaaaaatctggaattgttcagttatgcctaaatgagccatcaaaagccagacatgggta 156  Q
    |||| ||||| ||| | ||||||||||||||||||| || ||| ||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  40642441 aacattttataagaacgtcaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaagctagacatgggta 40642540  T
Q  157 agcaactcaccaccctggctaagttgcctagcatgatgaagccctctacattgacttgctgcatgacacagcatctctacccaaacatgacttatcattt 256  Q
    || ||||| |||||||||||||| ||| ||||||||||||| ||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||||    
T  40642541 agaaactcgccaccctggctaagctgcttagcatgatgaagtcctctacattggctagctgcatgacacaacatctccacccaaacatgacttatcattt 40642640  T
Q  257 cccatttctgt 267  Q
    |||||||||||    
T  40642641 cccatttctgt 40642651  T

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