View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11204_high_2 (Length: 619)
Name: NF11204_high_2
Description: NF11204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11204_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 59 - 592
Target Start/End: Complemental strand, 19172666 - 19172133
Alignment:
| Q |
59 |
acatcatcatcttcatcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacacactcaagaacaatcacctcccattactccgtcgtt |
158 |
Q |
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| T |
19172666 |
acatcatcatcttcatcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacacactcaagaacaatcacctcccattactccgtcgtt |
19172567 |
T |
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| Q |
159 |
ctatctccggcgcctccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaatcttactaccacaccctcgacgcagctgcaaccac |
258 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19172566 |
ctatctccggcgactccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaatcttactaccacaccctcgacgcagctgcaatcac |
19172467 |
T |
|
| Q |
259 |
agacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatctctgacctccatcctttcatcttcaccaatcttgct |
358 |
Q |
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| T |
19172466 |
agacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatctctgacctccatcctttcatcttcaccaatcttgct |
19172367 |
T |
|
| Q |
359 |
cgttcttttcttgacgacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaatagccatggcatgga |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19172366 |
cgttcttttcttgacgacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaatagccatggcgtgga |
19172267 |
T |
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| Q |
459 |
ggaatccatcagaaaccctaagaacacgtatggaacaaatagagtgcggtttgaagtccatcgttccaacacttaacgataggcttacacgcgcggaagg |
558 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19172266 |
ggaatccatcagaaaccctaataacacgtatggagcaaatagagtgcggtttgaagtccatcgttccaacgcttaacgataggcttacacgcgcggaagg |
19172167 |
T |
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| Q |
559 |
ctgtttcgttgaacacgttgttggtgactggttt |
592 |
Q |
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| T |
19172166 |
ctgtttcattaaaaacgttgttggtgactggttt |
19172133 |
T |
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